Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JNN51_RS07675 Genome accession   NZ_CP068807
Coordinates   1599517..1600254 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain RIVM_C018583     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594517..1605254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN51_RS07660 (JNN51_07660) clpC 1594971..1597544 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  JNN51_RS07665 (JNN51_07665) yfiH 1597674..1598405 (-) 732 WP_001551518.1 purine nucleoside phosphorylase YfiH -
  JNN51_RS07670 (JNN51_07670) rluD 1598402..1599382 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JNN51_RS07675 (JNN51_07675) comL 1599517..1600254 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JNN51_RS07680 (JNN51_07680) raiA 1600525..1600866 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JNN51_RS07685 (JNN51_07685) pheL 1600970..1601017 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JNN51_RS07690 (JNN51_07690) pheA 1601116..1602276 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JNN51_RS07695 (JNN51_07695) tyrA 1602319..1603440 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JNN51_RS07700 (JNN51_07700) aroF 1603451..1604521 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JNN51_RS07705 (JNN51_07705) yfiL 1604730..1605095 (+) 366 WP_019842457.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=461908 JNN51_RS07675 WP_000197686.1 1599517..1600254(+) (comL) [Escherichia coli strain RIVM_C018583]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=461908 JNN51_RS07675 WP_000197686.1 1599517..1600254(+) (comL) [Escherichia coli strain RIVM_C018583]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376