Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JNN34_RS05820 Genome accession   NZ_CP068803
Coordinates   1206311..1207048 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain RIVM_C018404     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1201311..1212048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN34_RS05790 (JNN34_05790) yfiL 1201469..1201834 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  JNN34_RS05795 (JNN34_05795) aroF 1202044..1203114 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JNN34_RS05800 (JNN34_05800) tyrA 1203125..1204246 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JNN34_RS05805 (JNN34_05805) pheA 1204289..1205449 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  JNN34_RS05810 (JNN34_05810) pheL 1205548..1205595 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JNN34_RS05815 (JNN34_05815) raiA 1205699..1206040 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JNN34_RS05820 (JNN34_05820) comL 1206311..1207048 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JNN34_RS05825 (JNN34_05825) rluD 1207183..1208163 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JNN34_RS05830 (JNN34_05830) yfiH 1208160..1208891 (+) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  JNN34_RS05835 (JNN34_05835) clpC 1209021..1211594 (+) 2574 WP_047661014.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=461587 JNN34_RS05820 WP_000197686.1 1206311..1207048(-) (comL) [Escherichia coli strain RIVM_C018404]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=461587 JNN34_RS05820 WP_000197686.1 1206311..1207048(-) (comL) [Escherichia coli strain RIVM_C018404]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376