Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JNN40_RS21310 Genome accession   NZ_CP068802
Coordinates   4440375..4441112 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain RIVM_C018249     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4435375..4446112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN40_RS21280 (JNN40_21280) yfiL 4435532..4435897 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  JNN40_RS21285 (JNN40_21285) aroF 4436106..4437176 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JNN40_RS21290 (JNN40_21290) tyrA 4437187..4438308 (+) 1122 WP_000225222.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JNN40_RS21295 (JNN40_21295) pheA 4438352..4439512 (-) 1161 WP_000200110.1 bifunctional chorismate mutase/prephenate dehydratase -
  JNN40_RS21300 (JNN40_21300) pheL 4439612..4439659 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JNN40_RS21305 (JNN40_21305) raiA 4439763..4440104 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JNN40_RS21310 (JNN40_21310) comL 4440375..4441112 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JNN40_RS21315 (JNN40_21315) rluD 4441247..4442227 (+) 981 WP_000079109.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JNN40_RS21320 (JNN40_21320) yfiH 4442224..4442955 (+) 732 WP_000040165.1 purine nucleoside phosphorylase YfiH -
  JNN40_RS21325 (JNN40_21325) clpC 4443085..4445658 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=461554 JNN40_RS21310 WP_000197686.1 4440375..4441112(-) (comL) [Escherichia coli strain RIVM_C018249]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=461554 JNN40_RS21310 WP_000197686.1 4440375..4441112(-) (comL) [Escherichia coli strain RIVM_C018249]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTAGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376