Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   LILO_RS12400 Genome accession   NC_020450
Coordinates   833950..835008 (+) Length   352 a.a.
NCBI ID   WP_414843017.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 828950..840008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS04090 (lilo_0771) - 829250..829912 (+) 663 WP_042230203.1 response regulator transcription factor -
  LILO_RS04095 (lilo_0772) - 830058..831209 (+) 1152 WP_015426141.1 sensor histidine kinase -
  LILO_RS04100 (lilo_0773) - 831349..832065 (+) 717 WP_015426142.1 nucleoside phosphorylase -
  LILO_RS04105 (lilo_0774) pnuC 832194..832907 (+) 714 WP_012897492.1 nicotinamide riboside transporter PnuC -
  LILO_RS12395 uvrC 833002..833964 (+) 963 Protein_785 excinuclease ABC subunit UvrC -
  LILO_RS12400 uvrC 833950..835008 (+) 1059 WP_414843017.1 hypothetical protein Machinery gene
  LILO_RS04115 (lilo_0776) mutY 835171..836334 (+) 1164 WP_015426144.1 A/G-specific adenine glycosylase -
  LILO_RS04120 (lilo_0777) pepV 836400..837818 (+) 1419 WP_015426145.1 dipeptidase PepV -
  LILO_RS04125 (lilo_0778) acpS 837921..838280 (+) 360 WP_015426146.1 holo-ACP synthase -
  LILO_RS04130 (lilo_0779) alr 838325..839428 (+) 1104 WP_003132601.1 alanine racemase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39109.20 Da        Isoelectric Point: 10.0863

>NTDB_id=46147 LILO_RS12400 WP_414843017.1 833950..835008(+) (uvrC) [Lactococcus lactis subsp. lactis IO-1]
MEAVVAASQEGNLLTKAQAKEVDAKVFTAKTLKFSDQKDVEQSIVKLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNM
ATKNAQSQLQLKFDVAERDILKTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKTV
VGADDYASMREVMTRRYSRALKEETALPDLIAMDGGAGQVNIAKQVLKELGLSIPVAGMQKNDKHQTSELLFGDPLDVVP
LSRQSQEFFLLTRIQDEVHRFAITFHRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEAGIPYEV
AERVKTTLSGPIQENENWESLKDIVPLLEGKK

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=46147 LILO_RS12400 WP_414843017.1 833950..835008(+) (uvrC) [Lactococcus lactis subsp. lactis IO-1]
GTGGAAGCAGTAGTTGCAGCTAGCCAAGAGGGAAATTTATTAACTAAAGCTCAAGCTAAAGAAGTCGATGCAAAAGTTTT
TACGGCCAAGACGCTTAAATTTTCTGATCAAAAAGATGTTGAGCAATCAATTGTTAAACTTGATAAAGAATTATCAGCCG
AAAAACGTTTATCATCACTTTTAGCTAAAACACAGATTGTTCAACCAAGTCGTGGTGAGAAAAAGCAATTGGTTAATATG
GCAACTAAGAATGCTCAAAGTCAATTGCAATTGAAATTTGATGTGGCTGAGCGTGATATTTTGAAAACGACTAAAGCAGT
TGAAAACTTGGGTAAAATTTTGGGAATACCAAAACCTGTAAGAATTGAGTCTTTTGATAATTCAAATATTATGGGGACTT
CACCAGTATCTGCAATGGTTGTTTTTATTGATGGAAAACCTTCAAAAAAAGATTATCGGAAATATAAAATTAAAACAGTG
GTTGGTGCTGATGACTATGCTTCAATGCGCGAGGTGATGACGAGACGTTATTCACGAGCTTTAAAAGAAGAAACAGCTCT
TCCTGATTTGATTGCAATGGATGGTGGAGCTGGTCAAGTTAACATTGCCAAGCAAGTTTTAAAAGAGCTTGGGCTATCGA
TTCCGGTTGCTGGGATGCAAAAAAATGATAAGCACCAAACGTCAGAATTACTTTTTGGTGACCCTTTAGACGTGGTTCCC
TTGTCAAGACAATCTCAAGAATTCTTTTTGCTGACAAGAATTCAAGATGAGGTTCACCGTTTTGCGATTACATTCCATAG
ACAACTACGTGGTAAAAATACATTTTCAAGTAAATTGGACGGTATTGTTGGACTTGGTCCAAAACGAAAACAAAAGTTAC
TGACAACTTTCAAAAATTTGAAAGCAATTGAAGAGGCAAGTGTACAAGAAGTGGCAGAAGCTGGCATTCCTTATGAAGTA
GCAGAACGTGTGAAAACAACTTTGTCTGGACCAATTCAAGAAAATGAAAATTGGGAATCACTCAAGGATATTGTTCCTCT
TTTAGAAGGTAAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(113-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

70.741

76.705

0.543
  uvrC Streptococcus pneumoniae D39

70.741

76.705

0.543
  uvrC Streptococcus pneumoniae TIGR4

70.741

76.705

0.543

Multiple sequence alignment