Detailed information NTG0046119

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LILO_RS10190
• Genome accession: NC_020450
• Coordinates: 2127125..2128201 (+)
• Length: 358 a.a.
• NCBI ID: WP_015427091.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis IO-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2122125..2133201

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LILO_RS10165 (lilo_1960)	pgsA	2122232..2122804 (-)	573	WP_015427087.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LILO_RS10170 (lilo_1961)	-	2122845..2123741 (-)	897	WP_015427088.1	helix-turn-helix domain-containing protein	-
LILO_RS10175 (lilo_1962)	yfmH	2124006..2125289 (-)	1284	WP_029344435.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LILO_RS10180 (lilo_1963)	yfmF	2125279..2126565 (-)	1287	WP_023164564.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
LILO_RS10185 (lilo_1964)	yaaA	2126763..2127125 (+)	363	WP_004254746.1	S4 domain-containing protein YaaA	-
LILO_RS10190 (lilo_1965)	recF	2127125..2128201 (+)	1077	WP_015427091.1	DNA replication/repair protein RecF	Machinery gene
LILO_RS10195 (lilo_1966)	-	2128288..2128656 (-)	369	WP_015427092.1	carboxymuconolactone decarboxylase family protein	-
LILO_RS10200 (lilo_1967)	-	2128734..2129111 (+)	378	WP_015427093.1	MerR family transcriptional regulator	-
LILO_RS10205 (lilo_1968)	-	2129123..2130079 (-)	957	WP_042230622.1	alpha/beta hydrolase	-
LILO_RS10210 (lilo_1969)	galE	2130200..2131180 (-)	981	WP_042230624.1	UDP-glucose 4-epimerase GalE	-
LILO_RS10215 (lilo_1970)	-	2131299..2132780 (-)	1482	WP_015427096.1	UDP-glucose--hexose-1-phosphate uridylyltransferase	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41342.16 Da
• Isoelectric Point: 6.7560

>NTDB_id=46119 LILO_RS10190 WP_015427091.1 2127125..2128201(+) (recF) [Lactococcus lactis subsp. lactis IO-1]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDNLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=46119 LILO_RS10190 WP_015427091.1 2127125..2128201(+) (recF) [Lactococcus lactis subsp. lactis IO-1]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGATAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTGGTCAAAGGTTCTCCTGCTACCCGCAGAAAAT
TTATGGATATTGAACTAGGACAAATTCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTATTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAATCTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCACCGTGACGATTTACAATTTTTTATCAATGAGATCAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAGATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACCACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	54.722	100	0.55
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447