Detailed information NTG0461187

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HVZ82_RS20530
• Genome accession: NZ_CP057066
• Coordinates: 4187637..4188437 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain RHB39-C10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4182637..4193437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HVZ82_RS20495 (HVZ82_20500)	gspH	4182793..4183308 (+)	516	WP_040173141.1	type II secretion system minor pseudopilin GspH	-
HVZ82_RS20500 (HVZ82_20505)	gspI	4183305..4183670 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
HVZ82_RS20505 (HVZ82_20510)	gspJ	4183667..4184263 (+)	597	WP_065801187.1	type II secretion system minor pseudopilin GspJ	-
HVZ82_RS20510 (HVZ82_20515)	gspK	4184260..4185246 (+)	987	WP_095124280.1	type II secretion system minor pseudopilin GspK	-
HVZ82_RS20515 (HVZ82_20520)	gspL	4185233..4186426 (+)	1194	WP_019704440.1	type II secretion system protein GspL	-
HVZ82_RS20520 (HVZ82_20525)	-	4186419..4186904 (+)	486	WP_004145896.1	type II secretion system protein M	-
HVZ82_RS20525 (HVZ82_20530)	-	4186894..4187640 (+)	747	WP_181591671.1	type II secretion system protein N	-
HVZ82_RS20530 (HVZ82_20535)	pilD	4187637..4188437 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
HVZ82_RS20535 (HVZ82_20540)	hrpB	4188485..4190914 (-)	2430	WP_110230183.1	ATP-dependent helicase HrpB	-
HVZ82_RS20540 (HVZ82_20545)	thpR	4190987..4191523 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
HVZ82_RS20545 (HVZ82_20550)	sfsA	4191523..4192239 (+)	717	WP_004177390.1	DNA/RNA nuclease SfsA	-
HVZ82_RS20550 (HVZ82_20555)	dksA	4192402..4192857 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=461187 HVZ82_RS20530 WP_004145898.1 4187637..4188437(+) (pilD) [Klebsiella pneumoniae strain RHB39-C10]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=461187 HVZ82_RS20530 WP_004145898.1 4187637..4188437(+) (pilD) [Klebsiella pneumoniae strain RHB39-C10]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425