Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JNN38_RS06420 Genome accession   NZ_CP068796
Coordinates   1319599..1320336 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain RIVM_C012087     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314599..1325336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN38_RS06390 (JNN38_06390) yfiL 1314758..1315123 (-) 366 WP_019842457.1 DUF2799 domain-containing protein -
  JNN38_RS06395 (JNN38_06395) aroF 1315332..1316402 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JNN38_RS06400 (JNN38_06400) tyrA 1316413..1317534 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JNN38_RS06405 (JNN38_06405) pheA 1317577..1318737 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JNN38_RS06410 (JNN38_06410) pheL 1318836..1318883 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JNN38_RS06415 (JNN38_06415) raiA 1318987..1319328 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JNN38_RS06420 (JNN38_06420) comL 1319599..1320336 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JNN38_RS06425 (JNN38_06425) rluD 1320471..1321451 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JNN38_RS06430 (JNN38_06430) yfiH 1321448..1322179 (+) 732 WP_001551518.1 purine nucleoside phosphorylase YfiH -
  JNN38_RS06435 (JNN38_06435) clpC 1322309..1324882 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=461167 JNN38_RS06420 WP_000197686.1 1319599..1320336(-) (comL) [Escherichia coli strain RIVM_C012087]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=461167 JNN38_RS06420 WP_000197686.1 1319599..1320336(-) (comL) [Escherichia coli strain RIVM_C012087]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376