Detailed information NTG0460872

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HV075_RS20585
• Genome accession: NZ_CP056854
• Coordinates: 4188909..4189709 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain RHBSTW-00113
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4183909..4194709

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV075_RS20550 (HV075_20550)	gspH	4184065..4184580 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
HV075_RS20555 (HV075_20555)	gspI	4184577..4184942 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
HV075_RS20560 (HV075_20560)	gspJ	4184939..4185535 (+)	597	WP_023279845.1	type II secretion system minor pseudopilin GspJ	-
HV075_RS20565 (HV075_20565)	gspK	4185532..4186518 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
HV075_RS20570 (HV075_20570)	gspL	4186505..4187698 (+)	1194	WP_025985182.1	type II secretion system protein GspL	-
HV075_RS20575 (HV075_20575)	-	4187691..4188176 (+)	486	WP_004145896.1	type II secretion system protein M	-
HV075_RS20580 (HV075_20580)	-	4188166..4188912 (+)	747	WP_009309263.1	type II secretion system protein N	-
HV075_RS20585 (HV075_20585)	pilD	4188909..4189709 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
HV075_RS20590 (HV075_20590)	hrpB	4189757..4192186 (-)	2430	WP_004222692.1	ATP-dependent helicase HrpB	-
HV075_RS20595 (HV075_20595)	thpR	4192259..4192795 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
HV075_RS20600 (HV075_20600)	sfsA	4192795..4193511 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
HV075_RS20605 (HV075_20605)	dksA	4193674..4194129 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=460872 HV075_RS20585 WP_004145898.1 4188909..4189709(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00113]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=460872 HV075_RS20585 WP_004145898.1 4188909..4189709(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00113]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGGCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425