Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   LILO_RS05485 Genome accession   NC_020450
Coordinates   1122398..1123633 (+) Length   411 a.a.
NCBI ID   WP_012897750.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1117398..1128633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS05455 (lilo_1047) - 1118235..1118828 (+) 594 WP_003132093.1 xanthine phosphoribosyltransferase -
  LILO_RS05460 (lilo_1048) - 1118877..1120181 (+) 1305 WP_015426347.1 nucleobase:cation symporter-2 family protein -
  LILO_RS05465 (lilo_1049) - 1120210..1120623 (-) 414 WP_015426348.1 hypothetical protein -
  LILO_RS05470 (lilo_1050) - 1120743..1121252 (-) 510 WP_010905785.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  LILO_RS05475 (lilo_1051) - 1121651..1122157 (+) 507 WP_010905786.1 dihydrofolate reductase -
  LILO_RS05485 (lilo_1053) clpX 1122398..1123633 (+) 1236 WP_012897750.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  LILO_RS05490 (lilo_1054) yihA 1123630..1124217 (+) 588 WP_010905788.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  LILO_RS05495 (lilo_1055) folB 1124271..1124621 (+) 351 WP_003132106.1 dihydroneopterin aldolase -
  LILO_RS05500 (lilo_1056) folE 1124701..1125750 (+) 1050 WP_015426350.1 GTP cyclohydrolase I FolE -
  LILO_RS05505 (lilo_1057) folP 1125747..1126820 (+) 1074 WP_015426351.1 dihydropteroate synthase -
  LILO_RS05510 (lilo_1058) - 1126823..1127320 (+) 498 WP_015426352.1 NUDIX domain-containing protein -
  LILO_RS05515 (lilo_1059) - 1127339..1128622 (+) 1284 WP_015426353.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46024.89 Da        Isoelectric Point: 4.6053

>NTDB_id=46087 LILO_RS05485 WP_012897750.1 1122398..1123633(+) (clpX) [Lactococcus lactis subsp. lactis IO-1]
MSNTQNPNIHCSFCGKSQDDVKKMIAGSDVYICNECIELSTRILEEELREEQDSEMLEVKTPKEMFDHLNEYVIGQEKAK
RALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILL
KLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNI
LFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLTEEDLIQILT
EPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKA
EPQMIREAKKK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=46087 LILO_RS05485 WP_012897750.1 1122398..1123633(+) (clpX) [Lactococcus lactis subsp. lactis IO-1]
ATGTCAAATACACAAAATCCAAATATACATTGTTCTTTCTGTGGAAAGAGTCAAGATGATGTAAAAAAAATGATTGCCGG
TTCAGACGTTTATATTTGTAATGAATGTATTGAACTTTCAACTCGAATCTTAGAAGAAGAATTAAGAGAAGAACAAGATT
CAGAAATGCTTGAAGTTAAAACACCTAAAGAAATGTTTGACCATTTAAATGAATATGTGATAGGTCAAGAAAAAGCAAAA
CGTGCACTTGCAGTTGCTGTTTATAATCATTACAAACGAATTAATTTTACAGCAAGTAAAATTGCTGAAGATATTGAACT
ACAAAAATCAAACATTCTATTAATCGGACCTACCGGTTCTGGTAAGACTTTTCTCGCTCAAACTTTAGCGAAATCACTCA
ATGTTCCGTTTGCGATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTTGGAGAAGACGTTGAAAATATTCTCTTA
AAACTTTTACAAGCGAGTGATTTCAATATTGAACGTGCAGAACGCGGAATTATCTATATCGATGAAATTGATAAAATAGC
TAAAAAATCTGAAAATGTATCAATTACTCGTGACGTTTCTGGGGAAGGTGTTCAACAAGCCCTTTTGAAAATTATTGAAG
GGACAGTAGCTAGTGTTCCACCACAAGGTGGACGTAAACATCCTAATCAAGAAATGATTCAAATTGATACCAAAAATATC
TTATTTATCGTTGGTGGAGCTTTTGACGGGATTGAAGAAATTGTCAAACAACGTTTAGGTGAAAAAATTATTGGTTTTGG
TGCCAATAATAAAAAATTAAATGACGATGATTCTTATATGCAAGAAATTATTGCCGAGGACATTCAAAAATTCGGATTAA
TCCCTGAATTTATTGGTCGTCTGCCAATTGTTGCTGCTTTGGAACGTTTGACCGAAGAGGATTTGATTCAAATTTTGACA
GAACCTAAAAATGCTTTGATTAAACAATATAAACAACTCCTTTTATTTGATAATGTTGAACTTGAATTTGAAGATGAAGC
CCTCATGGCAATTGCTAGAAAAGCAATTGAGCGCAAAACAGGAGCGCGTGGACTTCGTTCAATTATTGAGGAAGTAATGA
TGGATATCATGTTTGAAGTTCCAAGTCATGAAGAAATTACAAAAGTTATTATTAATGAAGCAGTTGTTGACGGAAAAGCT
GAGCCACAAATGATTCGAGAGGCCAAGAAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(108-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(10-46)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(310-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

76.808

97.567

0.749
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.883

95.864

0.564

Multiple sequence alignment