Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   JM964_RS02635 Genome accession   NZ_CP068708
Coordinates   531840..532436 (+) Length   198 a.a.
NCBI ID   WP_024399909.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 526840..537436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS02620 (JM964_02620) vicX 526989..527792 (+) 804 WP_024407014.1 MBL fold metallo-hydrolase Regulator
  JM964_RS02625 (JM964_02625) vga(F) 528285..529670 (+) 1386 WP_202847633.1 ABC-F type ribosomal protection protein Vga(F) -
  JM964_RS02630 (JM964_02630) pbp2b 529762..531831 (+) 2070 WP_014637681.1 penicillin-binding protein PBP2B -
  JM964_RS02635 (JM964_02635) recR 531840..532436 (+) 597 WP_024399909.1 recombination mediator RecR Machinery gene
  JM964_RS02640 (JM964_02640) - 532541..533587 (+) 1047 WP_012775216.1 D-alanine--D-alanine ligase -
  JM964_RS02645 (JM964_02645) - 533826..534206 (+) 381 WP_024386937.1 OsmC family protein -
  JM964_RS02650 (JM964_02650) - 534208..535284 (+) 1077 WP_202847634.1 ABC transporter permease -
  JM964_RS02655 (JM964_02655) - 535294..535962 (+) 669 WP_024407021.1 ABC transporter ATP-binding protein -
  JM964_RS02660 (JM964_02660) - 536017..537378 (+) 1362 WP_044761690.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21607.71 Da        Isoelectric Point: 4.5456

>NTDB_id=460868 JM964_RS02635 WP_024399909.1 531840..532436(+) (recR) [Streptococcus suis strain ID33329]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLTYCSVCGNLTDQDPCGICQDSSRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDGINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=460868 JM964_RS02635 WP_024399909.1 531840..532436(+) (recR) [Streptococcus suis strain ID33329]
ATGCTATATCCTACACCCATTGCCAAGTTGATTGACAGTTACTCCAAATTACCAGGAATCGGTATTAAGACAGCTACGCG
GCTGGCCTTCTATACCATTGGTATGGAAGATGATGTGGTCAATGAATTTGCAAAAAATCTCTTGGCTGCCAAGAGGGATT
TGACCTATTGTTCGGTTTGTGGCAATCTGACAGACCAGGACCCTTGCGGTATTTGTCAAGATAGCAGTCGTGACCAGTCG
ACTATTTTAATTGTAGAAGACAGTCGAGATGTGACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGGTATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATAAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGTACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49