Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JKV48_RS01755 Genome accession   NZ_CP068682
Coordinates   387600..388712 (-) Length   370 a.a.
NCBI ID   WP_000775117.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCCP11854     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 382600..393712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKV48_RS01745 (JKV48_01725) gyrA 382959..385619 (-) 2661 WP_000819089.1 DNA gyrase subunit A -
  JKV48_RS01750 (JKV48_01730) gyrB 385656..387590 (-) 1935 WP_000255586.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  JKV48_RS01755 (JKV48_01735) recF 387600..388712 (-) 1113 WP_000775117.1 DNA replication/repair protein RecF Machinery gene
  JKV48_RS01760 (JKV48_01740) yaaA 388709..388954 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  JKV48_RS01765 (JKV48_01745) dnaN 389335..390468 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  JKV48_RS01770 (JKV48_01750) dnaA 390746..392107 (-) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  JKV48_RS01775 (JKV48_01755) rpmH 392838..392975 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  JKV48_RS01780 (JKV48_01760) rnpA 393096..393449 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42431.43 Da        Isoelectric Point: 6.4359

>NTDB_id=460671 JKV48_RS01755 WP_000775117.1 387600..388712(-) (recF) [Staphylococcus aureus strain NCCP11854]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYTQNEAAR
LEDIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=460671 JKV48_RS01755 WP_000775117.1 387600..388712(-) (recF) [Staphylococcus aureus strain NCCP11854]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGACTAACCCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATACTCAAAATGAAGCGGCACGA
CTTGAAGATATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTATATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

48.525

100

0.489