Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JKV47_RS10965 Genome accession   NZ_CP068680
Coordinates   2263331..2264068 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain NCCP12480     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2258331..2269068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKV47_RS10935 (JKV47_10850) yfiL 2258490..2258855 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  JKV47_RS10940 (JKV47_10855) aroF 2259065..2260135 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JKV47_RS10945 (JKV47_10860) tyrA 2260146..2261267 (+) 1122 WP_115194761.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JKV47_RS10950 (JKV47_10865) pheA 2261310..2262470 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JKV47_RS10955 (JKV47_10870) pheL 2262568..2262615 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JKV47_RS10960 (JKV47_10875) raiA 2262719..2263060 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JKV47_RS10965 (JKV47_10880) comL 2263331..2264068 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JKV47_RS10970 (JKV47_10885) rluD 2264203..2265183 (+) 981 WP_115194762.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JKV47_RS10975 (JKV47_10890) yfiH 2265180..2265911 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  JKV47_RS10980 (JKV47_10895) clpC 2266041..2268614 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=460633 JKV47_RS10965 WP_000197686.1 2263331..2264068(-) (comL) [Escherichia coli strain NCCP12480]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=460633 JKV47_RS10965 WP_000197686.1 2263331..2264068(-) (comL) [Escherichia coli strain NCCP12480]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376