Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HWQ22_RS01775 Genome accession   NZ_CP056784
Coordinates   383611..384429 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain TP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378611..389429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ22_RS01740 (HWQ22_06350) - 379194..379323 (-) 130 Protein_334 hypothetical protein -
  HWQ22_RS01745 (HWQ22_06355) rpoZ 379362..379640 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HWQ22_RS01750 (HWQ22_06360) gmk 379713..380342 (-) 630 WP_000015937.1 guanylate kinase -
  HWQ22_RS01755 (HWQ22_06365) ispH 380465..381415 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HWQ22_RS01760 (HWQ22_06370) fimU 381585..382058 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HWQ22_RS01765 (HWQ22_06375) pilV 382052..382612 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  HWQ22_RS01770 (HWQ22_06380) pilW 382613..383614 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  HWQ22_RS01775 (HWQ22_06385) pilX 383611..384429 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HWQ22_RS01780 (HWQ22_06390) pilY1 384441..388295 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  HWQ22_RS01785 (HWQ22_06395) pilY2 388308..388790 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  HWQ22_RS01790 (HWQ22_06400) pilE 388787..389212 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=460633 HWQ22_RS01775 WP_000149374.1 383611..384429(+) (pilX) [Acinetobacter baumannii strain TP1]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=460633 HWQ22_RS01775 WP_000149374.1 383611..384429(+) (pilX) [Acinetobacter baumannii strain TP1]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993