Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   JHS79_RS05950 Genome accession   NZ_CP068641
Coordinates   1309393..1310037 (+) Length   214 a.a.
NCBI ID   WP_005386783.1    Uniprot ID   Q87NC3
Organism   Vibrio parahaemolyticus strain VP157     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304393..1315037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS05930 (JHS79_05915) - 1304690..1305010 (-) 321 WP_005465080.1 HI1450 family dsDNA-mimic protein -
  JHS79_RS05935 (JHS79_05920) yeiP 1305013..1305579 (-) 567 WP_005465079.1 elongation factor P-like protein YeiP -
  JHS79_RS05940 (JHS79_05925) - 1305766..1306533 (+) 768 WP_053302168.1 nucleotidyltransferase domain-containing protein -
  JHS79_RS05945 (JHS79_05930) - 1306530..1308893 (-) 2364 WP_069535847.1 DNA polymerase II -
  JHS79_RS05950 (JHS79_05935) letA 1309393..1310037 (+) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  JHS79_RS05955 (JHS79_05940) uvrC 1310039..1311871 (+) 1833 WP_005494715.1 excinuclease ABC subunit UvrC Machinery gene
  JHS79_RS05960 (JHS79_05945) pgsA 1311918..1312475 (+) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23765.32 Da        Isoelectric Point: 5.6509

>NTDB_id=460340 JHS79_RS05950 WP_005386783.1 1309393..1310037(+) (letA) [Vibrio parahaemolyticus strain VP157]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMLMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=460340 JHS79_RS05950 WP_005386783.1 1309393..1310037(+) (letA) [Vibrio parahaemolyticus strain VP157]
TTGATTAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGATGCAGTGAAATGGTGTCGCAGTAATCATGCTGACGTCGTTTTAATGG
ACATGAACATGCCTGGGATTGGCGGCTTGGAAGCCACCAAGAAAATTCTTCGCGTGAATCCAGATGTGAAAATCATCGTA
CTAACCGTTCATACGGAAAATCCGTTTCCAACCAAAGTGATGCAGGCTGGTGCTTCTGGTTATTTAACCAAAGGTGCAGG
GCCGGATGAAATGGTAAATGCAATTCGTGTGGTCAATAGTGGGCAGCGTTACATCTCTCCAGAGATAGCGCAGCAAATGG
CATTGAGCCAGTTCTCACCAGCCTCTGAAAACCCATTTAAAGATTTGTCCGAACGTGAACTGCAAATCATGCTTATGATC
ACGAAAGGTCAGAAAGTAACGGATATTTCTGAGCAACTTAACTTAAGTCCAAAGACAGTCAACAGCTACCGCTATCGACT
GTTTAGCAAGCTGGACATTAATGGTGACGTCGAGTTAACACACTTAGCGATTCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87NC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.952

98.131

0.5
  letA Legionella pneumophila strain ERS1305867

50.952

98.131

0.5