Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JHS79_RS02750 Genome accession   NZ_CP068641
Coordinates   590458..591186 (-) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain VP157     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585458..596186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS02725 (JHS79_02725) trpR 585845..586156 (+) 312 WP_005497218.1 trp operon repressor -
  JHS79_RS02730 (JHS79_02730) yjjX 586205..586738 (-) 534 WP_021450232.1 inosine/xanthosine triphosphatase -
  JHS79_RS02735 (JHS79_02735) pheA 586763..587941 (-) 1179 WP_140126326.1 prephenate dehydratase -
  JHS79_RS02740 (JHS79_02740) hpf 588185..588511 (-) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JHS79_RS02745 (JHS79_02745) - 588842..590323 (-) 1482 WP_336885979.1 lytic transglycosylase F -
  JHS79_RS02750 (JHS79_02750) comL 590458..591186 (-) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  JHS79_RS02755 (JHS79_02755) rluD 591323..592300 (+) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JHS79_RS02760 (JHS79_02760) pgeF 592302..593030 (+) 729 WP_031417806.1 peptidoglycan editing factor PgeF -
  JHS79_RS02765 (JHS79_02765) clpC 593178..595751 (+) 2574 WP_140089641.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=460320 JHS79_RS02750 WP_005460312.1 590458..591186(-) (comL) [Vibrio parahaemolyticus strain VP157]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=460320 JHS79_RS02750 WP_005460312.1 590458..591186(-) (comL) [Vibrio parahaemolyticus strain VP157]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTACT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTAAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTAAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405