Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   JHT21_RS09730 Genome accession   NZ_CP068638
Coordinates   2018719..2019363 (-) Length   214 a.a.
NCBI ID   WP_005386783.1    Uniprot ID   Q87NC3
Organism   Vibrio parahaemolyticus strain VP120     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2013719..2024363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT21_RS09720 (JHT21_09685) pgsA 2016281..2016838 (-) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JHT21_RS09725 (JHT21_09690) uvrC 2016885..2018717 (-) 1833 WP_077345793.1 excinuclease ABC subunit UvrC Machinery gene
  JHT21_RS09730 (JHT21_09695) letA 2018719..2019363 (-) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  JHT21_RS09735 (JHT21_09700) - 2019863..2022226 (+) 2364 WP_029804414.1 DNA polymerase II -
  JHT21_RS09740 (JHT21_09705) - 2022223..2022990 (-) 768 WP_017448417.1 nucleotidyltransferase domain-containing protein -
  JHT21_RS09745 (JHT21_09710) yeiP 2023177..2023743 (+) 567 WP_005465079.1 elongation factor P-like protein YeiP -
  JHT21_RS09750 (JHT21_09715) - 2023746..2024066 (+) 321 WP_005465080.1 HI1450 family dsDNA-mimic protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23765.32 Da        Isoelectric Point: 5.6509

>NTDB_id=460262 JHT21_RS09730 WP_005386783.1 2018719..2019363(-) (letA) [Vibrio parahaemolyticus strain VP120]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMLMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=460262 JHT21_RS09730 WP_005386783.1 2018719..2019363(-) (letA) [Vibrio parahaemolyticus strain VP120]
TTGATTAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGATGCAGTGAAATGGTGTCGCAGTAATCATGCTGACGTCGTTTTAATGG
ACATGAACATGCCTGGGATTGGCGGCTTGGAAGCCACCAAGAAAATTCTTCGCGTGAATCCAGATGTGAAAATCATCGTA
CTAACCGTTCATACGGAAAATCCGTTTCCAACCAAAGTGATGCAGGCTGGTGCTTCTGGTTATTTAACCAAAGGTGCAGG
GCCGGATGAAATGGTAAATGCAATTCGTGTGGTCAATAGTGGGCAGCGTTACATCTCCCCAGAGATAGCGCAGCAAATGG
CATTGAGCCAGTTCTCACCAGCCTCTGAAAACCCATTTAAAGATTTGTCCGAACGTGAACTGCAAATCATGCTTATGATC
ACGAAAGGTCAGAAAGTAACGGATATTTCTGAGCAACTTAACTTAAGTCCAAAGACAGTCAACAGCTACCGCTATCGACT
GTTTAGCAAGCTGGACATTAATGGTGACGTCGAGTTAACACACTTAGCGATTCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87NC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.952

98.131

0.5
  letA Legionella pneumophila strain ERS1305867

50.952

98.131

0.5