Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JHS95_RS13755 Genome accession   NZ_CP068627
Coordinates   2841668..2842396 (+) Length   242 a.a.
NCBI ID   WP_020904194.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LH80     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2836668..2847396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS95_RS13740 (JHS95_13645) clpC 2837103..2839676 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  JHS95_RS13745 (JHS95_13650) pgeF 2839824..2840552 (-) 729 WP_140061761.1 peptidoglycan editing factor PgeF -
  JHS95_RS13750 (JHS95_13655) rluD 2840554..2841531 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JHS95_RS13755 (JHS95_13660) comL 2841668..2842396 (+) 729 WP_020904194.1 outer membrane protein assembly factor BamD Machinery gene
  JHS95_RS13760 (JHS95_13665) - 2842555..2844012 (+) 1458 WP_171971530.1 lytic transglycosylase F -
  JHS95_RS13765 (JHS95_13670) hpf 2844343..2844669 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JHS95_RS13770 (JHS95_13675) pheA 2844913..2846091 (+) 1179 WP_005468591.1 prephenate dehydratase -
  JHS95_RS13775 (JHS95_13680) yjjX 2846116..2846649 (+) 534 WP_031791327.1 inosine/xanthosine triphosphatase -
  JHS95_RS13780 (JHS95_13685) trpR 2846698..2847009 (-) 312 WP_237301845.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27875.81 Da        Isoelectric Point: 5.8151

>NTDB_id=460182 JHS95_RS13755 WP_020904194.1 2841668..2842396(+) (comL) [Vibrio parahaemolyticus strain LH80]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFNIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=460182 JHS95_RS13755 WP_020904194.1 2841668..2842396(+) (comL) [Vibrio parahaemolyticus strain LH80]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGATCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAACATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAATAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

40.833

99.174

0.405
  comL Neisseria gonorrhoeae MS11

40.417

99.174

0.401