Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV254_RS15415 Genome accession   NZ_CP056676
Coordinates   3171788..3172414 (-) Length   208 a.a.
NCBI ID   WP_023315767.1    Uniprot ID   A0A837FJ36
Organism   Enterobacter hormaechei strain RHBSTW-00642     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3166788..3177414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV254_RS15400 (HV254_15400) helD 3167027..3169081 (-) 2055 WP_045623332.1 DNA helicase IV -
  HV254_RS15405 (HV254_15405) - 3169204..3169650 (+) 447 WP_022647660.1 YccF domain-containing protein -
  HV254_RS15410 (HV254_15410) yccS 3169669..3171831 (+) 2163 WP_023299744.1 YccS family putative transporter -
  HV254_RS15415 (HV254_15415) sxy/tfoX 3171788..3172414 (-) 627 WP_023315767.1 TfoX/Sxy family DNA transformation protein Regulator
  HV254_RS15420 (HV254_15420) sulA 3172632..3173141 (+) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  HV254_RS15425 (HV254_15425) ompA 3173498..3174550 (+) 1053 WP_017694761.1 porin OmpA -
  HV254_RS15430 (HV254_15430) matP 3174616..3175068 (-) 453 WP_006809347.1 macrodomain Ter protein MatP -
  HV254_RS15435 (HV254_15435) - 3175255..3177015 (+) 1761 WP_045623334.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24002.57 Da        Isoelectric Point: 9.4592

>NTDB_id=460152 HV254_RS15415 WP_023315767.1 3171788..3172414(-) (sxy/tfoX) [Enterobacter hormaechei strain RHBSTW-00642]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=460152 HV254_RS15415 WP_023315767.1 3171788..3172414(-) (sxy/tfoX) [Enterobacter hormaechei strain RHBSTW-00642]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGTGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTATTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCTTCTTTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACTAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGATTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837FJ36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572