Detailed information NTG0459901

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HV180_RS23265
• Genome accession: NZ_CP056567
• Coordinates: 4910283..4911080 (+)
• Length: 265 a.a.
• NCBI ID: WP_049094324.1
• Uniprot ID: -
• Organism: Klebsiella oxytoca strain RHBSTW-00373
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4905283..4916080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV180_RS23230 (HV180_23235)	gspH	4905421..4905933 (+)	513	WP_142448046.1	type II secretion system minor pseudopilin GspH	-
HV180_RS23235 (HV180_23240)	gspI	4905930..4906295 (+)	366	WP_004110668.1	type II secretion system minor pseudopilin GspI	-
HV180_RS23240 (HV180_23245)	gspJ	4906292..4906888 (+)	597	WP_064355927.1	type II secretion system minor pseudopilin GspJ	-
HV180_RS23245 (HV180_23250)	gspK	4906885..4907865 (+)	981	WP_064355928.1	type II secretion system minor pseudopilin GspK	-
HV180_RS23250 (HV180_23255)	gspL	4907858..4909054 (+)	1197	WP_142448045.1	type II secretion system protein GspL	-
HV180_RS23255 (HV180_23260)	-	4909047..4909532 (+)	486	WP_016808874.1	type II secretion system protein M	-
HV180_RS23260 (HV180_23265)	-	4909522..4910280 (+)	759	WP_024273737.1	type II secretion system protein N	-
HV180_RS23265 (HV180_23270)	pilD	4910283..4911080 (+)	798	WP_049094324.1	A24 family peptidase	Machinery gene
HV180_RS23270 (HV180_23275)	hrpB	4911178..4913607 (-)	2430	WP_004110648.1	ATP-dependent helicase HrpB	-
HV180_RS23275 (HV180_23280)	thpR	4913680..4914216 (+)	537	WP_004108002.1	RNA 2',3'-cyclic phosphodiesterase	-
HV180_RS23280 (HV180_23285)	sfsA	4914216..4914932 (+)	717	WP_004108004.1	DNA/RNA nuclease SfsA	-
HV180_RS23285 (HV180_23290)	dksA	4915097..4915552 (+)	456	WP_004098689.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29182.99 Da
• Isoelectric Point: 8.3391

>NTDB_id=459901 HV180_RS23265 WP_049094324.1 4910283..4911080(+) (pilD) [Klebsiella oxytoca strain RHBSTW-00373]
MENIALLPEFAAQFPLIWGGFLFLSGLAFGSFFNVVIHRLPLMMEYAEGVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
KGRSRCCGRPISRRYPLMELATGALFMLVGYLIPPGMPLLGGLILLSLLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLT
DLFAPLAEAVVGAMAGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQALPHTLLLASASGLIWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWGQV

Nucleotide

• Length: 798 bp

>NTDB_id=459901 HV180_RS23265 WP_049094324.1 4910283..4911080(+) (pilD) [Klebsiella oxytoca strain RHBSTW-00373]
GTGGAAAACATCGCATTGTTACCCGAGTTCGCCGCGCAATTCCCGTTAATCTGGGGCGGTTTTTTATTCTTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAGTACGCAGAGGGAGTGAATCTCTGCC
TCCCCGCATCGTTCTGTCCGCAGTGCCGTCAGCCCATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AAGGGGCGTTCGCGCTGCTGCGGGCGACCGATTTCACGTCGCTATCCGCTGATGGAGCTGGCGACCGGCGCGCTGTTTAT
GCTGGTCGGGTACCTGATCCCTCCTGGCATGCCGCTGCTGGGCGGGTTAATTTTATTGTCGCTGCTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACTCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTACC
GATCTCTTCGCGCCGCTGGCGGAGGCGGTCGTTGGCGCGATGGCCGGGTATCTATCGCTGTGGTCAGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGTGATTTCAAGCTGCTGGCGGCGCTCGGCGCGTGGCTCGGCTGGC
AGGCGCTGCCGCATACGCTGCTGCTGGCTTCCGCCAGCGGCCTGATCTGGACGCTGCTGCAGCGCCTGGTAACCCGTCGT
TCGCTCGAACAGCCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGGGCCAGGTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-110)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.425	98.491	0.487
pilD	Vibrio campbellii strain DS40M4	44.043	100	0.46
pilD	Neisseria gonorrhoeae MS11	47.826	95.472	0.457
pilD	Acinetobacter nosocomialis M2	45.56	97.736	0.445
pilD	Acinetobacter baumannii D1279779	45.174	97.736	0.442