Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV191_RS23880 Genome accession   NZ_CP056546
Coordinates   4889082..4889642 (+) Length   186 a.a.
NCBI ID   WP_071687500.1    Uniprot ID   A0A2X3KY02
Organism   Citrobacter sp. RHBSTW-00424     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4884082..4894642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV191_RS23855 (HV191_23860) - 4884610..4884943 (+) 334 Protein_4707 DNA polymerase III subunit theta -
  HV191_RS23860 (HV191_23865) - 4885605..4885832 (+) 228 WP_071687504.1 hypothetical protein -
  HV191_RS23865 (HV191_23870) - 4885925..4886155 (+) 231 WP_071687503.1 hypothetical protein -
  HV191_RS23870 (HV191_23875) - 4886207..4887589 (+) 1383 WP_071687502.1 DUF3560 domain-containing protein -
  HV191_RS23875 (HV191_23880) - 4887636..4888199 (+) 564 WP_071687501.1 class I SAM-dependent methyltransferase -
  HV191_RS27170 - 4888606..4888748 (-) 143 Protein_4712 hypothetical protein -
  HV191_RS23880 (HV191_23885) ssb 4889082..4889642 (+) 561 WP_071687500.1 single-stranded DNA-binding protein Machinery gene
  HV191_RS23885 (HV191_23890) - 4889694..4889927 (+) 234 WP_071687499.1 DUF905 domain-containing protein -
  HV191_RS23890 (HV191_23895) - 4889996..4892047 (+) 2052 WP_127663647.1 ParB/RepB/Spo0J family partition protein -
  HV191_RS23895 (HV191_23900) psiB 4892090..4892524 (+) 435 WP_114141097.1 conjugation system SOS inhibitor PsiB -
  HV191_RS23900 (HV191_23905) - 4892521..4893249 (+) 729 WP_071687496.1 plasmid SOS inhibition protein A -
  HV191_RS23905 (HV191_23910) - 4893246..4893572 (+) 327 WP_071698816.1 theronine dehydrogenase -
  HV191_RS23910 (HV191_23915) - 4893683..4894138 (+) 456 WP_127663648.1 conjugation system SOS inhibitor PsiB family protein -
  HV191_RS23915 (HV191_23920) - 4894154..4894435 (-) 282 WP_127702263.1 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20264.60 Da        Isoelectric Point: 7.9808

>NTDB_id=459833 HV191_RS23880 WP_071687500.1 4889082..4889642(+) (ssb) [Citrobacter sp. RHBSTW-00424]
MTVRGINKVIIVGNLGQDPEVRYMPNGGAVANLSLATSESWRDKQTGEMRENTEWHRVVLFGKLAEVACEYLRKGAQVYV
EGQLRTRNWQDDSGVTRYVTEIVVGQNGTMQMLGGRRDGGQSQSTAPQQQSAQPQTPATPSQPAGTPEKSPKAKGGRKGR
QSAAPSQQVPQPLPDDYPPMDDDAPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=459833 HV191_RS23880 WP_071687500.1 4889082..4889642(+) (ssb) [Citrobacter sp. RHBSTW-00424]
ATGACCGTACGCGGCATCAACAAAGTCATCATCGTGGGTAATCTGGGCCAGGACCCAGAAGTCCGTTACATGCCCAATGG
CGGCGCGGTCGCTAACCTCAGCCTCGCCACTTCGGAGTCCTGGCGCGATAAACAGACCGGAGAGATGCGCGAAAACACCG
AATGGCATCGCGTGGTGCTGTTTGGCAAGCTCGCGGAAGTGGCCTGCGAGTATCTGCGCAAAGGCGCTCAGGTGTACGTC
GAGGGGCAACTGCGCACCCGAAACTGGCAGGACGACAGCGGCGTGACACGTTATGTCACTGAAATCGTTGTCGGACAGAA
CGGCACTATGCAGATGCTGGGTGGTCGTCGTGACGGCGGTCAGTCTCAGAGCACGGCTCCGCAGCAGCAGTCCGCACAAC
CGCAGACGCCAGCCACTCCGTCACAACCAGCTGGCACTCCTGAAAAATCCCCGAAAGCGAAGGGCGGCAGAAAAGGCCGT
CAGAGCGCCGCACCGTCTCAGCAGGTGCCGCAGCCGTTACCGGACGATTATCCACCGATGGATGATGATGCCCCGTTTTG
A

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.974

100

0.618
  ssb Glaesserella parasuis strain SC1401

50.811

99.462

0.505
  ssb Neisseria gonorrhoeae MS11

43.523

100

0.452
  ssb Neisseria meningitidis MC58

43.523

100

0.452