Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   JL477_RS06090 Genome accession   NZ_CP068567
Coordinates   1157032..1157898 (-) Length   288 a.a.
NCBI ID   WP_053869772.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CC19PF065     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1152032..1162898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL477_RS06070 (JL477_06070) gpsA 1152332..1153228 (-) 897 WP_072233169.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  JL477_RS06075 (JL477_06075) gatB 1153225..1154643 (-) 1419 WP_126204086.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  JL477_RS09810 - 1154761..1154946 (-) 186 WP_052779690.1 hypothetical protein -
  JL477_RS06080 (JL477_06080) atpB 1154943..1155623 (-) 681 WP_052779689.1 F0F1 ATP synthase subunit A -
  JL477_RS06085 (JL477_06085) radA 1155692..1157032 (-) 1341 WP_212203113.1 DNA repair protein RadA Machinery gene
  JL477_RS06090 (JL477_06090) pilA 1157032..1157898 (-) 867 WP_053869772.1 signal recognition particle-docking protein FtsY Machinery gene
  JL477_RS06095 (JL477_06095) - 1157898..1158455 (-) 558 WP_057095916.1 TlpA family protein disulfide reductase -
  JL477_RS06100 (JL477_06100) - 1158538..1159164 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  JL477_RS06105 (JL477_06105) rny 1159085..1160638 (+) 1554 WP_057095917.1 ribonuclease Y -
  JL477_RS06110 (JL477_06110) - 1160647..1161204 (+) 558 WP_052779687.1 DedA family protein -
  JL477_RS06115 (JL477_06115) - 1161204..1162463 (+) 1260 WP_002873165.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32006.99 Da        Isoelectric Point: 5.2821

>NTDB_id=459833 JL477_RS06090 WP_053869772.1 1157032..1157898(-) (pilA) [Campylobacter jejuni strain CC19PF065]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKIETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=459833 JL477_RS06090 WP_053869772.1 1157032..1157898(-) (pilA) [Campylobacter jejuni strain CC19PF065]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAATAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCGGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGGGCGTGTGATACTTTTAGAGCAGGTGCAATTGAACAATTAAAACTTTGGG
CACAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACTATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTGATTATCGATACAGCAGGGCGCTTACAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTAGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.604

100

0.42