Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JL477_RS06085 Genome accession   NZ_CP068567
Coordinates   1155692..1157032 (-) Length   446 a.a.
NCBI ID   WP_212203113.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CC19PF065     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1150692..1162032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL477_RS06065 (JL477_06065) - 1151144..1152322 (-) 1179 WP_052781693.1 metal-dependent hydrolase -
  JL477_RS06070 (JL477_06070) gpsA 1152332..1153228 (-) 897 WP_072233169.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  JL477_RS06075 (JL477_06075) gatB 1153225..1154643 (-) 1419 WP_126204086.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  JL477_RS09810 - 1154761..1154946 (-) 186 WP_052779690.1 hypothetical protein -
  JL477_RS06080 (JL477_06080) atpB 1154943..1155623 (-) 681 WP_052779689.1 F0F1 ATP synthase subunit A -
  JL477_RS06085 (JL477_06085) radA 1155692..1157032 (-) 1341 WP_212203113.1 DNA repair protein RadA Machinery gene
  JL477_RS06090 (JL477_06090) pilA 1157032..1157898 (-) 867 WP_053869772.1 signal recognition particle-docking protein FtsY Machinery gene
  JL477_RS06095 (JL477_06095) - 1157898..1158455 (-) 558 WP_057095916.1 TlpA family protein disulfide reductase -
  JL477_RS06100 (JL477_06100) - 1158538..1159164 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  JL477_RS06105 (JL477_06105) rny 1159085..1160638 (+) 1554 WP_057095917.1 ribonuclease Y -
  JL477_RS06110 (JL477_06110) - 1160647..1161204 (+) 558 WP_052779687.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49057.99 Da        Isoelectric Point: 7.1888

>NTDB_id=459832 JL477_RS06085 WP_212203113.1 1155692..1157032(-) (radA) [Campylobacter jejuni strain CC19PF065]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFIELKAEQIKVLKELAQVSMKTSEAVCIEDVELERFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=459832 JL477_RS06085 WP_212203113.1 1155692..1157032(-) (radA) [Campylobacter jejuni strain CC19PF065]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTATAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAAGCTGTTTGTATTGAAGATGTGGAATTAGAACGTTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCTCAGATTAAAT
TAAGAGCTGATCGCCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTACACAAAAAGGATTATAGTATTCTTATCATTGATTCTATACAAACTCTATATTCAAATAAAGTCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTCGAACTTATGCGTGTTAGCAAGGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGGGTTCTTGAACATATGGTGGATGTGGTGCTTTATTTTGAAGGA
GATGCCACTAAAGAAATTAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATTAGCGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAGCTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGAGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGACTTAAGTGTTTTGTTGCTAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

AAA domain (AAA_25)

(68-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

45.638

100

0.457
  radA Streptococcus pneumoniae Rx1

45.638

100

0.457
  radA Streptococcus pneumoniae D39

45.638

100

0.457
  radA Streptococcus pneumoniae TIGR4

45.638

100

0.457
  radA Streptococcus mitis SK321

45.618

99.776

0.455
  radA Streptococcus mitis NCTC 12261

45.618

99.776

0.455
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.207

97.534

0.451