Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JL477_RS05450 Genome accession   NZ_CP068567
Coordinates   1032536..1033087 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CC19PF065     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1027536..1038087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL477_RS05415 (JL477_05415) - 1027724..1028150 (+) 427 Protein_1051 GNAT family N-acetyltransferase -
  JL477_RS05420 (JL477_05420) - 1028214..1028835 (+) 622 Protein_1052 NAD(P)H-dependent oxidoreductase -
  JL477_RS05425 (JL477_05425) - 1028835..1029440 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  JL477_RS05430 (JL477_05430) pgsA 1029565..1030101 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JL477_RS05435 (JL477_05435) rseP 1030098..1031204 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  JL477_RS05440 (JL477_05440) - 1031197..1032063 (+) 867 WP_032592436.1 VirK family antimicrobial peptide resistance protein -
  JL477_RS05445 (JL477_05445) rpsF 1032150..1032527 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  JL477_RS05450 (JL477_05450) ssb 1032536..1033087 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  JL477_RS05455 (JL477_05455) rpsR 1033098..1033358 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  JL477_RS05460 (JL477_05460) lon 1033418..1035793 (-) 2376 WP_002853487.1 endopeptidase La -
  JL477_RS05465 (JL477_05465) bamD 1035810..1036457 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  JL477_RS05470 (JL477_05470) fliW 1036618..1037007 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  JL477_RS05475 (JL477_05475) proC 1037007..1037738 (+) 732 WP_052801667.1 pyrroline-5-carboxylate reductase Machinery gene
  JL477_RS05480 (JL477_05480) ctsT 1037735..1038037 (+) 303 WP_002936694.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=459825 JL477_RS05450 WP_002853013.1 1032536..1033087(+) (ssb) [Campylobacter jejuni strain CC19PF065]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=459825 JL477_RS05450 WP_002853013.1 1032536..1033087(+) (ssb) [Campylobacter jejuni strain CC19PF065]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGTACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361