Detailed information NTG0459809

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HV193_RS21045
• Genome accession: NZ_CP056530
• Coordinates: 4302724..4303524 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain RHBSTW-00433
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4297724..4308524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV193_RS21010 (HV193_21020)	gspH	4297880..4298395 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
HV193_RS21015 (HV193_21025)	gspI	4298392..4298757 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
HV193_RS21020 (HV193_21030)	gspJ	4298754..4299350 (+)	597	WP_023159595.1	type II secretion system minor pseudopilin GspJ	-
HV193_RS21025 (HV193_21035)	gspK	4299347..4300333 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
HV193_RS21030 (HV193_21040)	gspL	4300320..4301513 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
HV193_RS21035 (HV193_21045)	-	4301506..4301991 (+)	486	WP_040236726.1	type II secretion system protein M	-
HV193_RS21040 (HV193_21050)	-	4301981..4302727 (+)	747	WP_004178605.1	type II secretion system protein N	-
HV193_RS21045 (HV193_21055)	pilD	4302724..4303524 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
HV193_RS21050 (HV193_21060)	hrpB	4303572..4306001 (-)	2430	WP_040236129.1	ATP-dependent helicase HrpB	-
HV193_RS21055 (HV193_21065)	thpR	4306074..4306610 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
HV193_RS21060 (HV193_21070)	sfsA	4306610..4307326 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
HV193_RS21065 (HV193_21075)	dksA	4307489..4307944 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=459809 HV193_RS21045 WP_004191960.1 4302724..4303524(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00433]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=459809 HV193_RS21045 WP_004191960.1 4302724..4303524(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00433]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCAGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTATTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGAGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421