Detailed information NTG0459692

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HV204_RS23590
• Genome accession: NZ_CP056483
• Coordinates: 5009619..5010419 (+)
• Length: 266 a.a.
• NCBI ID: WP_181486488.1
• Uniprot ID: -
• Organism: Klebsiella sp. RHBSTW-00464
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5004619..5015419

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV204_RS23555 (HV204_23555)	gspH	5004760..5005272 (+)	513	WP_181483526.1	type II secretion system minor pseudopilin GspH	-
HV204_RS23560 (HV204_23560)	gspI	5005269..5005634 (+)	366	WP_181483527.1	type II secretion system minor pseudopilin GspI	-
HV204_RS23565 (HV204_23565)	gspJ	5005631..5006227 (+)	597	WP_181483528.1	type II secretion system minor pseudopilin GspJ	-
HV204_RS23570 (HV204_23570)	gspK	5006224..5007204 (+)	981	WP_181483529.1	type II secretion system minor pseudopilin GspK	-
HV204_RS23575 (HV204_23575)	gspL	5007197..5008393 (+)	1197	WP_181483530.1	type II secretion system protein GspL	-
HV204_RS23580 (HV204_23580)	-	5008386..5008871 (+)	486	WP_181483531.1	type II secretion system protein M	-
HV204_RS23585 (HV204_23585)	-	5008861..5009619 (+)	759	WP_181483532.1	type II secretion system protein N	-
HV204_RS23590 (HV204_23590)	pilD	5009619..5010419 (+)	801	WP_181486488.1	A24 family peptidase	Machinery gene
HV204_RS23595 (HV204_23595)	-	5010517..5011479 (-)	963	WP_197975051.1	IS110 family transposase	-
HV204_RS23600 (HV204_23600)	hrpB	5011860..5014289 (-)	2430	WP_181483533.1	ATP-dependent helicase HrpB	-
HV204_RS23605 (HV204_23605)	thpR	5014362..5014898 (+)	537	WP_139537010.1	RNA 2',3'-cyclic phosphodiesterase	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29362.13 Da
• Isoelectric Point: 7.1439

>NTDB_id=459692 HV204_RS23590 WP_181486488.1 5009619..5010419(+) (pilD) [Klebsiella sp. RHBSTW-00464]
MIENITQLEEFAAQFPLVWSGFLLLFGLTFGSFFNVVIHRLPLMMEQVGGINLCFPASFCPQCRQSIAWRDNIPLLSFLW
LKGHSRCCGLPISHRYPLVELATGMLFALVGYLMLPGIPLLGGLLLLSVLLILAAIDAQTQLLPDRLTLPLLWAGLLFNL
NDTFVPLADAVIGAMAGYLSLWTVFWVFRLLTGKEALGYGDFKLLAALGAWCGWQMLPQTLLLASASGLVWTLLQRLVTR
QSLQQPLAFGPWLALAGGGIFLWSQI

Nucleotide

• Length: 801 bp

>NTDB_id=459692 HV204_RS23590 WP_181486488.1 5009619..5010419(+) (pilD) [Klebsiella sp. RHBSTW-00464]
ATGATAGAAAATATCACGCAGCTGGAGGAGTTTGCCGCACAATTCCCGCTCGTCTGGAGCGGTTTTTTACTCCTTTTCGG
CCTGACGTTCGGCAGCTTTTTTAACGTCGTTATTCACCGCTTACCGCTGATGATGGAGCAGGTCGGGGGAATTAATCTTT
GCTTTCCTGCGTCGTTCTGCCCGCAGTGCCGTCAGTCCATCGCCTGGCGGGATAATATTCCCCTTTTGAGCTTTCTGTGG
CTGAAGGGGCATTCACGCTGCTGCGGACTACCGATATCGCATCGTTATCCGCTGGTAGAGCTGGCGACCGGCATGCTGTT
TGCGTTGGTCGGATACCTGATGCTTCCGGGGATACCGCTGCTGGGCGGCCTGCTTCTGCTGTCGGTTCTGCTAATCCTTG
CCGCCATCGACGCGCAAACGCAGCTGCTGCCCGATCGGCTGACCCTACCACTGCTATGGGCCGGGCTGCTGTTTAATCTT
AACGATACCTTCGTTCCGCTGGCGGATGCGGTCATCGGCGCGATGGCCGGGTATTTGTCGCTCTGGACGGTGTTTTGGGT
ATTTCGTCTGCTAACCGGCAAGGAGGCGCTGGGCTACGGTGATTTTAAGCTGCTGGCGGCGCTCGGGGCATGGTGCGGCT
GGCAGATGCTACCACAAACGCTGCTGCTGGCCTCCGCCAGCGGCCTGGTCTGGACGCTGTTACAGCGGCTGGTGACCCGG
CAATCGCTGCAACAACCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGGATCTTTTTGTGGAGCCAGATATA
A

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (124-232)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-111)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.425	98.12	0.485
pilD	Neisseria gonorrhoeae MS11	46.667	95.865	0.447
pilD	Vibrio campbellii strain DS40M4	42.96	100	0.447
pilD	Acinetobacter nosocomialis M2	44.788	97.368	0.436
pilD	Acinetobacter baumannii D1279779	44.402	97.368	0.432