Detailed information NTG0459418

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HV247_RS21245
• Genome accession: NZ_CP056385
• Coordinates: 4303228..4304028 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain RHBSTW-00610
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4298228..4309028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV247_RS21210 (HV247_21210)	gspH	4298384..4298899 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
HV247_RS21215 (HV247_21215)	gspI	4298896..4299261 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
HV247_RS21220 (HV247_21220)	gspJ	4299258..4299854 (+)	597	WP_032424607.1	type II secretion system minor pseudopilin GspJ	-
HV247_RS21225 (HV247_21225)	gspK	4299851..4300837 (+)	987	WP_077256163.1	type II secretion system minor pseudopilin GspK	-
HV247_RS21230 (HV247_21230)	gspL	4300824..4302017 (+)	1194	WP_032424606.1	type II secretion system protein GspL	-
HV247_RS21235 (HV247_21235)	-	4302010..4302495 (+)	486	WP_004151943.1	type II secretion system protein M	-
HV247_RS21240 (HV247_21240)	-	4302485..4303231 (+)	747	WP_009309263.1	type II secretion system protein N	-
HV247_RS21245 (HV247_21245)	pilD	4303228..4304028 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
HV247_RS21250 (HV247_21250)	hrpB	4304076..4306505 (-)	2430	WP_032424605.1	ATP-dependent helicase HrpB	-
HV247_RS21255 (HV247_21255)	thpR	4306578..4307114 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
HV247_RS21260 (HV247_21260)	sfsA	4307114..4307830 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
HV247_RS21265 (HV247_21265)	dksA	4307993..4308448 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=459418 HV247_RS21245 WP_004145898.1 4303228..4304028(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00610]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=459418 HV247_RS21245 WP_004145898.1 4303228..4304028(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00610]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425