Detailed information NTG0459210

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HV282_RS21300
• Genome accession: NZ_CP056329
• Coordinates: 4307872..4308672 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain RHBSTW-00807
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4302872..4313672

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV282_RS21265 (HV282_21265)	gspH	4303028..4303543 (+)	516	WP_181502253.1	type II secretion system minor pseudopilin GspH	-
HV282_RS21270 (HV282_21270)	gspI	4303540..4303905 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
HV282_RS21275 (HV282_21275)	gspJ	4303902..4304498 (+)	597	WP_038807639.1	type II secretion system minor pseudopilin GspJ	-
HV282_RS21280 (HV282_21280)	gspK	4304495..4305481 (+)	987	WP_077258272.1	type II secretion system minor pseudopilin GspK	-
HV282_RS21285 (HV282_21285)	gspL	4305468..4306661 (+)	1194	WP_048255484.1	type II secretion system protein GspL	-
HV282_RS21290 (HV282_21290)	-	4306654..4307139 (+)	486	WP_004151943.1	type II secretion system protein M	-
HV282_RS21295 (HV282_21295)	-	4307129..4307875 (+)	747	WP_023316460.1	type II secretion system protein N	-
HV282_RS21300 (HV282_21300)	pilD	4307872..4308672 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
HV282_RS21305 (HV282_21305)	hrpB	4308720..4311149 (-)	2430	WP_111459578.1	ATP-dependent helicase HrpB	-
HV282_RS21310 (HV282_21310)	thpR	4311222..4311758 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
HV282_RS21315 (HV282_21315)	sfsA	4311758..4312474 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
HV282_RS21320 (HV282_21320)	dksA	4312637..4313092 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=459210 HV282_RS21300 WP_004145898.1 4307872..4308672(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00807]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=459210 HV282_RS21300 WP_004145898.1 4307872..4308672(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00807]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTCCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGTTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425