Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   JHW37_RS01945 Genome accession   NZ_CP068238
Coordinates   408187..408552 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain A39-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403187..413552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW37_RS01915 (JHW37_01915) pyrR 403821..404333 (-) 513 WP_003157749.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  JHW37_RS01920 (JHW37_01920) ruvX 404434..404868 (-) 435 WP_053816547.1 Holliday junction resolvase RuvX -
  JHW37_RS01925 (JHW37_01925) - 404868..405437 (-) 570 WP_053816548.1 YqgE/AlgH family protein -
  JHW37_RS01930 (JHW37_01930) - 405486..406379 (-) 894 WP_053816549.1 energy transducer TonB -
  JHW37_RS01935 (JHW37_01935) gshB 406525..407478 (-) 954 WP_012073999.1 glutathione synthase -
  JHW37_RS01940 (JHW37_01940) pilG 407733..408140 (+) 408 WP_003148848.1 twitching motility response regulator PilG Regulator
  JHW37_RS01945 (JHW37_01945) pilH 408187..408552 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  JHW37_RS01950 (JHW37_01950) - 408602..409138 (+) 537 WP_003148849.1 chemotaxis protein CheW -
  JHW37_RS01955 (JHW37_01955) pilJ 409224..411272 (+) 2049 WP_012074000.1 chemotaxis chemoreceptor PilJ -
  JHW37_RS01960 (JHW37_01960) pilK 411333..412208 (+) 876 WP_053816550.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=459197 JHW37_RS01945 WP_003084587.1 408187..408552(+) (pilH) [Pseudomonas aeruginosa strain A39-1]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=459197 JHW37_RS01945 WP_003084587.1 408187..408552(+) (pilH) [Pseudomonas aeruginosa strain A39-1]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCGCGCCAGGAAAAGCCCGACGTGGTCCTGATGGATATCG
TCATGCCCGGCCTCAACGGGTTCCAGGCGACCCGCCAGCTGACCAAGGACGCCGAGACCAGCGCCATTCCGGTGATCATC
GTCACCACCAAGGATCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACGCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364