Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I6J13_RS04340 Genome accession   NZ_CP068213
Coordinates   913188..914846 (-) Length   552 a.a.
NCBI ID   WP_006269740.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 908188..919846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS04315 (I6J13_04315) ceuB 908429..909382 (+) 954 WP_006269745.1 ABC transporter permease Machinery gene
  I6J13_RS04320 (I6J13_04320) - 909375..910337 (+) 963 WP_006269749.1 iron chelate uptake ABC transporter family permease subunit -
  I6J13_RS04325 (I6J13_04325) - 910338..911090 (+) 753 WP_006269739.1 ABC transporter ATP-binding protein -
  I6J13_RS04330 (I6J13_04330) - 911112..912083 (+) 972 WP_003068226.1 siderophore ABC transporter substrate-binding protein -
  I6J13_RS04335 (I6J13_04335) - 912146..912877 (-) 732 WP_006269744.1 metallophosphoesterase -
  I6J13_RS04340 (I6J13_04340) recN 913188..914846 (-) 1659 WP_006269740.1 DNA repair protein RecN Machinery gene
  I6J13_RS04345 (I6J13_04345) - 914854..915285 (-) 432 WP_006269766.1 arginine repressor -
  I6J13_RS04350 (I6J13_04350) - 915278..916093 (-) 816 WP_003068218.1 TlyA family RNA methyltransferase -
  I6J13_RS04355 (I6J13_04355) - 916059..916961 (-) 903 WP_006269753.1 polyprenyl synthetase family protein -
  I6J13_RS04360 (I6J13_04360) - 916958..917170 (-) 213 WP_003068213.1 exodeoxyribonuclease VII small subunit -
  I6J13_RS04365 (I6J13_04365) xseA 917148..918488 (-) 1341 WP_006269765.1 exodeoxyribonuclease VII large subunit -
  I6J13_RS04370 (I6J13_04370) - 918581..919420 (-) 840 WP_006269760.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62698.00 Da        Isoelectric Point: 4.5319

>NTDB_id=459118 I6J13_RS04340 WP_006269740.1 913188..914846(-) (recN) [Streptococcus constellatus strain FDAARGOS_1156]
MLLEISIKNFAIIEEVSLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGAPKAEIEGLFAIEQSKALVEIF
EQQGLDMTDELIIRREIFQNGRSISRINGQMVNLSVLRSVGQHLVDIHGQHDQEELMRSQLHIAMLDEFGDEVFFKLKAD
YQQTFDQYRQLRKQVITIQKNQEENKARIDMLEYQIAEIEAANLRAGEDLALNQERDKLLNHKQIADTLTNAYAMLDNEE
FSSLSNIRAAMNDMEAIEEYDVTYKEIAANLSESYYVLEDATKRLEDILDNMDFDGDRLLEVERRLDLIYSITRKYGGHV
DDVLAYLEQISKEYALLTGKNLSSNDLDQELRKLEKDLVSLAGRLSQERHELAQQLEAEIQQELKDLYMEKANFRVQFTK
GKFSREGNEHVEFYISTNPGEDYKPLVKIASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLLQVIAIADYQFFIEKISDEYSTVSTVRLLSDEERIEEIAKMLAGENVTEAALTQARELLKQ

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=459118 I6J13_RS04340 WP_006269740.1 913188..914846(-) (recN) [Streptococcus constellatus strain FDAARGOS_1156]
ATGTTACTTGAAATTTCCATTAAAAATTTTGCAATTATTGAAGAGGTTTCTCTCAATTTTGAGCAAGGCATGACTGTTTT
GACAGGTGAAACGGGTGCTGGGAAGTCTATTATCATTGATGCTATGAATATGATGTTGGGAAGCCGAGCAACAACAGATG
TGATTCGTCATGGCGCTCCGAAAGCTGAGATTGAAGGACTGTTTGCGATTGAACAGAGTAAAGCTTTGGTTGAAATCTTT
GAGCAGCAAGGGCTTGATATGACAGATGAGTTGATTATTCGGCGAGAAATTTTCCAAAACGGTCGCAGTATCAGTCGTAT
TAATGGTCAAATGGTCAATTTATCCGTTTTGCGATCGGTTGGACAGCATTTGGTGGATATTCATGGTCAGCACGACCAAG
AAGAGTTGATGCGTTCCCAGTTACATATTGCTATGTTGGACGAGTTTGGAGATGAAGTATTTTTTAAACTCAAAGCGGAT
TATCAGCAAACTTTTGATCAGTATCGTCAGTTGCGTAAGCAAGTTATAACGATTCAGAAGAATCAAGAAGAAAATAAGGC
GCGAATTGATATGCTGGAATATCAGATTGCAGAGATTGAGGCGGCCAATTTAAGAGCTGGCGAAGATTTGGCATTAAACC
AAGAACGTGATAAATTACTCAACCATAAGCAGATTGCAGACACTTTGACAAATGCCTACGCTATGCTGGATAATGAGGAG
TTTTCGAGTTTATCTAATATTCGAGCTGCCATGAATGATATGGAAGCTATCGAAGAGTACGATGTTACTTACAAAGAAAT
TGCGGCTAATCTTTCTGAGTCTTACTATGTACTGGAAGACGCAACAAAGCGTTTGGAAGACATTCTAGATAACATGGATT
TTGATGGTGATCGTCTCTTAGAAGTTGAAAGGCGTCTAGATCTAATTTATAGCATTACTCGTAAATACGGTGGGCATGTG
GATGATGTGTTAGCTTATTTAGAGCAAATTTCTAAAGAATATGCGCTTTTGACTGGAAAGAATCTCTCATCAAATGATTT
GGATCAAGAGCTGAGAAAGCTAGAGAAAGATTTGGTCTCTTTAGCAGGTCGTCTGAGTCAGGAACGGCACGAATTAGCCC
AGCAATTGGAAGCAGAGATTCAGCAAGAATTAAAAGATCTCTATATGGAAAAGGCGAATTTTCGAGTTCAATTTACCAAA
GGAAAGTTTAGCCGCGAGGGAAATGAGCATGTTGAATTTTACATTTCGACTAATCCGGGCGAAGATTACAAACCGCTCGT
TAAGATTGCTTCCGGTGGCGAATTGTCACGTTTGATGTTGGCAATCAAGTCTGCTTTTTCTCGTAAAGAAGGCAAGACAA
GCATTGTTTTTGATGAAGTAGACACAGGCGTATCTGGACGTGTTGCGCAAGCTATTGCTCAGAAAATTCATAAAATTGGC
TCCAATGGACAAGTTCTTGCCATCTCGCACCTACTACAAGTGATTGCTATTGCAGATTATCAATTTTTCATCGAGAAAAT
ATCAGATGAATATTCAACAGTTTCAACAGTTCGCTTGTTGTCTGATGAAGAGCGTATCGAAGAGATTGCTAAAATGTTAG
CGGGTGAAAATGTGACTGAAGCAGCTCTCACGCAGGCTAGAGAACTATTGAAACAGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.035

100

0.455