Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   I6J13_RS04085 Genome accession   NZ_CP068213
Coordinates   862957..864750 (-) Length   597 a.a.
NCBI ID   WP_006269660.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 857957..869750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS04065 (I6J13_04065) pepV 858011..859411 (-) 1401 WP_006269631.1 dipeptidase PepV -
  I6J13_RS04070 (I6J13_04070) - 859431..860036 (-) 606 WP_006269692.1 nitroreductase family protein -
  I6J13_RS04075 (I6J13_04075) - 860141..861865 (-) 1725 WP_006269663.1 AAA family ATPase -
  I6J13_RS04080 (I6J13_04080) - 861862..862839 (-) 978 WP_006269615.1 hypothetical protein -
  I6J13_RS04085 (I6J13_04085) uvrC 862957..864750 (-) 1794 WP_006269660.1 excinuclease ABC subunit UvrC Machinery gene
  I6J13_RS04090 (I6J13_04090) ptsP 865130..866863 (-) 1734 WP_006269669.1 phosphoenolpyruvate--protein phosphotransferase -
  I6J13_RS04095 (I6J13_04095) - 866865..867128 (-) 264 WP_003023815.1 phosphocarrier protein HPr -
  I6J13_RS04100 (I6J13_04100) nrdH 867526..867744 (+) 219 WP_006269677.1 glutaredoxin-like protein NrdH -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 68776.26 Da        Isoelectric Point: 9.4026

>NTDB_id=459114 I6J13_RS04085 WP_006269660.1 862957..864750(-) (uvrC) [Streptococcus constellatus strain FDAARGOS_1156]
MNNLIKSKLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDTKTEALVSEVEDFEFIVTESNIEALLLEIN
LIKENQPKYNIMLKDDKSYPFIKITNETYPRLIITRQVKKDSGLYFGPYPDVGAANEIKRLLDRIFPFRKCTNPPEKVCF
YYHIGQCRAHTICHNDPHFFQEMAQEVADFLKGHDNKIIDELKGKMTSAAEKMEFEKAAEYRDLLQSIATLRTKQRVMAR
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNMFPYYNDPDEDFLTYIGQFYQNKSHLVPNEILIPSDIDEESVRAV
VDTKILKPQRGEKKQLVNLAIKNAQVSLQQKFDLLEKSIEKTQGAIENLGRLLNIPTPVRIESFDNSNIMGTSPVSAMVV
FINGKPSKKDYRKYKIKTVIGPDDYASMREVIKRRYSRVMRDGLLPPDLIVIDGGQGQVNIAKDVIQNQLGLDIPIAGLQ
KNDKHQTHELLFGDPLEVVELSRNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSL
TKIKEASVEEIVEVGVPRKVAEAVRAKLNELGKRKEI

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=459114 I6J13_RS04085 WP_006269660.1 862957..864750(-) (uvrC) [Streptococcus constellatus strain FDAARGOS_1156]
ATGAACAACTTAATTAAATCAAAATTAGAGTTATTGCCGACTAGCCCAGGCTGTTATATCCACAAGGATAAAAATGGTAC
GATCATCTATGTAGGAAAAGCTAAGAATCTGCGCAATCGGGTGCGCTCGTATTTTCGCGGAAGTCATGATACTAAAACGG
AAGCGTTAGTGTCTGAGGTTGAGGATTTTGAGTTTATTGTCACTGAGTCTAATATTGAAGCTTTGTTGCTTGAAATCAAT
CTTATCAAGGAAAATCAACCCAAATACAACATCATGCTTAAGGACGATAAGTCCTATCCTTTTATCAAAATTACCAATGA
GACATATCCGCGGCTTATAATCACACGTCAGGTTAAGAAAGATAGTGGTTTATATTTTGGCCCGTATCCTGATGTAGGTG
CTGCGAATGAAATTAAGCGCCTACTGGATCGCATTTTCCCTTTCCGAAAGTGTACCAATCCACCTGAGAAAGTTTGCTTC
TACTATCATATCGGACAGTGTCGAGCTCATACTATCTGCCATAATGATCCACATTTCTTTCAAGAGATGGCTCAAGAAGT
AGCAGATTTCCTCAAAGGTCATGATAATAAGATTATTGATGAATTGAAAGGAAAAATGACTAGTGCTGCTGAAAAGATGG
AATTTGAAAAAGCGGCTGAATACCGAGATTTGCTTCAAAGTATTGCGACACTTCGCACCAAGCAACGAGTGATGGCAAGG
GATTTACAGAATCGGGATGTCTTTGGCTATTATGTGGACAAAGGATGGATGTGTGTGCAGGTTTTCTTTGTCCGTCAAGG
AAAACTCATTGAGCGAGATGTAAATATGTTTCCTTATTACAATGACCCTGACGAGGATTTTTTGACTTATATTGGACAAT
TTTATCAGAATAAATCTCATCTGGTGCCCAATGAAATTTTGATTCCATCTGATATTGACGAGGAATCAGTACGGGCTGTG
GTGGATACAAAAATCCTTAAGCCTCAACGAGGAGAAAAGAAACAGCTGGTCAATCTGGCAATTAAGAATGCTCAAGTTAG
TTTACAGCAGAAGTTTGACTTATTAGAGAAATCTATTGAAAAAACGCAAGGAGCAATTGAAAATCTAGGCCGGCTCCTCA
ATATTCCCACTCCAGTTCGGATTGAGTCGTTTGATAATTCCAATATTATGGGAACAAGCCCTGTTTCAGCTATGGTGGTT
TTTATCAATGGCAAACCCAGCAAAAAAGATTATCGCAAGTATAAGATTAAGACAGTTATCGGTCCGGATGACTATGCCAG
TATGCGAGAAGTGATTAAGCGCCGTTATAGCCGAGTCATGCGAGATGGTTTACTACCGCCTGATCTGATTGTCATTGATG
GTGGCCAAGGTCAAGTCAATATTGCAAAAGACGTCATTCAAAATCAGTTAGGCTTAGATATTCCTATCGCTGGTTTGCAA
AAGAACGACAAGCATCAGACTCATGAATTGCTTTTTGGTGATCCGTTGGAAGTGGTCGAATTATCTCGCAATTCACAGGA
ATTTTTCCTTTTGCAACGCATTCAAGATGAAGTCCACCGCTTTGCCATTACCTTCCATCGCCAGCTCCGGTCTAAGAATT
CCTTCTCATCGCAACTCGATGGTATCGAAGGCTTGGGACCTAAGCGCAAGCAAAATCTCATGAAGCATTTCAAATCGCTA
ACTAAGATTAAAGAAGCAAGTGTTGAGGAAATTGTCGAAGTAGGCGTACCGCGAAAAGTGGCAGAGGCAGTGCGGGCTAA
GTTGAACGAACTGGGCAAGCGGAAAGAAATATAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

UvrB/uvrC motif (UVR)

(197-228)

Helix-hairpin-helix domain (HHH_5)

(538-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

89.376

99.33

0.888
  uvrC Streptococcus pneumoniae R6

89.039

99.33

0.884
  uvrC Streptococcus pneumoniae D39

89.039

99.33

0.884