Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CJS3_RS07410 Genome accession   NC_017281
Coordinates   1403038..1404222 (-) Length   394 a.a.
NCBI ID   WP_011049977.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni S3     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1398038..1409222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJS3_RS07385 (CJS3_1503) fliL 1399186..1399722 (+) 537 WP_002868488.1 flagellar basal body-associated protein FliL -
  CJS3_RS07390 (CJS3_1504) acpS 1399722..1400069 (+) 348 WP_002780441.1 holo-ACP synthase -
  CJS3_RS07395 (CJS3_1505) - 1400070..1400489 (-) 420 WP_002780440.1 hypothetical protein -
  CJS3_RS07400 (CJS3_1506) - 1400486..1401847 (-) 1362 WP_002780438.1 cytochrome P450 -
  CJS3_RS07405 (CJS3_1507) - 1401844..1402965 (-) 1122 WP_002780436.1 hypothetical protein -
  CJS3_RS07410 (CJS3_1508) kpsS 1403038..1404222 (-) 1185 WP_011049977.1 capsule polysaccharide modification protein KpsS Regulator
  CJS3_RS07415 (CJS3_1509) kpsC 1404219..1406291 (-) 2073 WP_002867280.1 capsular polysaccharide biosynthesis protein -
  CJS3_RS07420 (CJS3_1510) - 1406269..1408188 (-) 1920 WP_011049978.1 hypothetical protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46810.54 Da        Isoelectric Point: 9.9369

>NTDB_id=45911 CJS3_RS07410 WP_011049977.1 1403038..1404222(-) (kpsS) [Campylobacter jejuni subsp. jejuni S3]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIDETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=45911 CJS3_RS07410 WP_011049977.1 1403038..1404222(-) (kpsS) [Campylobacter jejuni subsp. jejuni S3]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGACCTGTGGGAAATTTTTT
TCATCATCTTGCAATAAAAATGAAAAAAAAACAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGTATTATCCATGCTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGGGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGATGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.97

100

0.98

Multiple sequence alignment