Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV298_RS16235 Genome accession   NZ_CP056297
Coordinates   3278878..3279474 (-) Length   198 a.a.
NCBI ID   WP_117082612.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain RHBSTW-00852     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3273878..3284474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV298_RS16220 (HV298_16220) helD 3274086..3276140 (-) 2055 WP_014907883.1 DNA helicase IV -
  HV298_RS16225 (HV298_16225) - 3276265..3276711 (+) 447 WP_002898425.1 YccF domain-containing protein -
  HV298_RS16230 (HV298_16230) yccS 3276729..3278864 (+) 2136 WP_002898422.1 YccS family putative transporter -
  HV298_RS16235 (HV298_16235) sxy/tfoX 3278878..3279474 (-) 597 WP_117082612.1 TfoX/Sxy family DNA transformation protein Regulator
  HV298_RS16240 (HV298_16240) sulA 3279823..3280332 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  HV298_RS16245 (HV298_16245) ompA 3280685..3281755 (+) 1071 WP_002898408.1 porin OmpA -
  HV298_RS16250 (HV298_16250) matP 3281887..3282339 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HV298_RS16255 (HV298_16255) - 3282525..3284282 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22488.06 Da        Isoelectric Point: 9.8087

>NTDB_id=459088 HV298_RS16235 WP_117082612.1 3278878..3279474(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHBSTW-00852]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRQASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=459088 HV298_RS16235 WP_117082612.1 3278878..3279474(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHBSTW-00852]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACAGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.795

98.485

0.51