Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   I6J13_RS00795 Genome accession   NZ_CP068213
Coordinates   165762..169037 (+) Length   1091 a.a.
NCBI ID   WP_006269918.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 160762..174037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS00765 (I6J13_00765) - 161068..161934 (+) 867 WP_006269907.1 ABC transporter permease -
  I6J13_RS00770 (I6J13_00770) - 161931..162686 (+) 756 WP_006269920.1 ABC transporter ATP-binding protein -
  I6J13_RS00775 (I6J13_00775) - 162699..163040 (-) 342 WP_037565830.1 hypothetical protein -
  I6J13_RS00780 (I6J13_00780) - 163126..163338 (+) 213 WP_003069777.1 YdbC family protein -
  I6J13_RS00785 (I6J13_00785) - 163537..164430 (+) 894 WP_006269933.1 ABC transporter ATP-binding protein -
  I6J13_RS00790 (I6J13_00790) - 164427..165641 (+) 1215 WP_006269939.1 ABC transporter permease -
  I6J13_RS00795 (I6J13_00795) rexB 165762..169037 (+) 3276 WP_006269918.1 ATP-dependent nuclease subunit B Machinery gene
  I6J13_RS00800 (I6J13_00800) rexA 169034..172714 (+) 3681 WP_006269935.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 125795.01 Da        Isoelectric Point: 5.0834

>NTDB_id=459088 I6J13_RS00795 WP_006269918.1 165762..169037(+) (rexB) [Streptococcus constellatus strain FDAARGOS_1156]
MKLLYTDIRNPLTKILVKEAERLAQEGKRVFYIAPNSLSFEKERAVLALLENHASFAITVTRFAQMARYFVLNDVQKGEN
IDDIGLSMLFYKVLSEMNEHDLRLYGGIRTDAQFIQQLVELYHELQVAQMSYTDLDYLEEAEKKADLIKIFQVVMYQLNQ
SEFTSDSNIMAFTHHIIAGDVDEELQDLVLVIDGFTRFSAEEAYLIELLHNKGVEIIIGAYASEKAYRASFREGNLYQAS
VDFLRQLAGKFEVKPEYIPASQPDDAFGKISKLLESRYDFSDVDLKLTEQDRSHVQIWSTVNQKEELEYVAKSIRQLVHD
GVRYKDIRVLLGDVETYHLQLKTIFDQYQIPFYLGRSEAMAHHPLVQFIEALVRLKHYNFRTEDLLNLLKTGLYGHLKQE
ELDLFEQYIRFADVRGMSKFSKEFTHNQQRKFNLVHINQLRKNIVTPLLEFFKSRSQTATGLLQKFHQFLTTISFSQNFA
GLVDFTNPQDQERQEEVWKAFCHVLEQFANVFSASKVNLDDFLTLVQSGMLLSNYRTIPATVDVVTVQSYDLIEPLSSPF
VYAIGLTQDYFPKIAQNKTLLSDEDRLLLNEVTDEHSELLIAAQENLKKNRFVALSLLNAATDRLVLSTPQIVNEIENDI
SPYLLELREQPIALPIEVKHPQATSDDIGTYRALLARVIELNQGDIDKEHSLTEKEQTFWSVAVRVLRKKLESEGISIPN
VTSSLETETLSEQTLQILYPPHQVFLLSTSALTEFYRNQYAYFLKYILALQEEMTIYPDARSHGNFLHRVFEKVVHDQSN
EQFDIRLEKAIQEVSCEPEFEALYTESAKALFAHEVLLDAARATGRVLERNDLVETIQEEAVFGQESAEFLTLSDGRNLQ
IRGKVDRIDRLRSNDSLGIVDYKSSDTDFDFQKFFNGLNSQLPTYLMALKQEKWTSDEAQVFGAMYLQMTNPLVPLAKTK
SQSDAVKEVMKTLEYKGLFLSEQAYQLNDLYNKKKVNLLSQEELETLLAYNALLYRRAAEQILTGHFKINPYTENGKSIA
PFVEQYKSITGFEANLHLSSARHLVKLEGKNSTGEKKRQAWIEKMKEELEK

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=459088 I6J13_RS00795 WP_006269918.1 165762..169037(+) (rexB) [Streptococcus constellatus strain FDAARGOS_1156]
ATGAAATTACTTTATACAGATATTCGCAATCCCTTAACGAAGATTTTGGTGAAAGAAGCAGAACGCTTGGCACAGGAAGG
TAAGCGCGTGTTTTATATTGCACCTAATTCTCTTTCATTTGAAAAGGAGAGAGCTGTTTTGGCTCTTTTAGAAAACCATG
CTTCCTTTGCTATTACAGTGACACGTTTTGCGCAGATGGCACGTTATTTTGTCCTCAATGATGTGCAAAAGGGAGAAAAC
ATAGATGATATTGGGCTTAGCATGCTCTTTTATAAAGTGCTTTCAGAAATGAATGAGCATGATTTGAGGCTGTATGGTGG
CATTCGGACGGATGCACAATTTATTCAGCAATTGGTTGAGCTCTATCATGAACTGCAAGTCGCTCAGATGAGTTATACAG
ACCTAGACTATTTGGAAGAAGCAGAGAAAAAAGCAGATTTAATCAAGATTTTTCAAGTAGTGATGTATCAGCTTAATCAG
AGTGAATTTACTTCTGATTCAAATATCATGGCCTTTACCCATCATATTATAGCAGGTGATGTGGATGAGGAACTGCAGGA
TTTAGTCTTGGTTATTGATGGGTTTACGCGCTTTTCGGCTGAGGAAGCTTATTTGATCGAGCTTTTGCATAATAAGGGTG
TGGAAATTATCATCGGTGCTTATGCAAGTGAAAAAGCGTATCGTGCAAGTTTTCGAGAGGGCAATCTTTATCAGGCGAGT
GTTGATTTCTTGCGACAGTTAGCAGGTAAATTTGAAGTGAAACCTGAATATATACCAGCAAGCCAGCCAGATGATGCTTT
TGGAAAGATTTCAAAACTGTTAGAAAGTCGGTATGATTTCTCAGATGTTGACCTAAAGTTAACGGAGCAGGATCGATCGC
ATGTGCAGATTTGGTCAACAGTCAATCAAAAAGAAGAATTAGAATATGTGGCAAAAAGCATTCGTCAGTTAGTTCATGAT
GGAGTTCGTTATAAGGATATTCGCGTTCTTTTGGGAGATGTGGAAACGTATCATTTACAGTTAAAGACGATTTTTGATCA
GTATCAAATCCCTTTTTATCTGGGACGAAGTGAGGCTATGGCCCATCACCCTTTGGTGCAATTTATTGAAGCTTTAGTGC
GCCTAAAACACTACAATTTTCGAACGGAAGATTTGCTCAATCTCTTAAAAACAGGTCTTTATGGTCATTTAAAGCAAGAA
GAACTAGACTTGTTTGAGCAATATATCCGTTTTGCAGACGTGAGAGGAATGAGTAAGTTTTCTAAAGAATTTACTCATAA
TCAACAACGAAAATTTAATCTAGTTCATATCAATCAATTAAGAAAAAATATAGTCACTCCTCTCTTGGAATTTTTTAAAT
CTCGCAGTCAAACAGCGACAGGCCTGCTTCAAAAATTTCATCAATTTTTAACAACAATTTCTTTTTCTCAGAATTTTGCT
GGTTTAGTAGATTTTACGAATCCGCAAGATCAAGAACGGCAAGAAGAAGTTTGGAAAGCTTTTTGCCATGTTTTGGAACA
ATTTGCCAATGTCTTTTCAGCTAGCAAAGTCAATCTAGATGATTTTCTGACTCTGGTGCAGTCAGGAATGCTGTTATCTA
ATTATCGAACGATTCCAGCAACAGTAGACGTTGTGACCGTTCAGTCTTATGACTTGATTGAGCCGTTGTCAAGTCCTTTT
GTTTACGCGATTGGTTTGACCCAAGACTATTTTCCCAAAATTGCACAAAATAAGACTCTTTTGTCAGATGAAGACCGTTT
GTTGCTAAACGAAGTGACAGATGAGCATTCGGAATTGCTGATTGCTGCTCAGGAAAATCTCAAGAAAAATCGTTTTGTCG
CCTTGTCACTTCTAAATGCTGCAACGGATAGATTGGTACTTTCCACTCCTCAGATTGTCAATGAAATAGAGAATGACATT
TCTCCATATCTGTTGGAACTGCGTGAGCAACCAATTGCTTTGCCAATTGAGGTGAAGCATCCGCAGGCAACAAGTGATGA
TATTGGTACTTATCGTGCTTTATTGGCGAGGGTTATTGAGTTGAATCAAGGAGATATTGATAAAGAGCATTCTTTGACTG
AGAAAGAACAGACTTTTTGGTCAGTAGCTGTACGAGTTTTGCGCAAAAAATTGGAAAGTGAAGGCATTTCGATTCCGAAT
GTCACGTCAAGTCTTGAGACAGAAACCTTGTCAGAGCAGACTTTGCAAATCCTTTATCCGCCTCATCAAGTATTTCTATT
GTCGACTTCAGCTTTGACAGAATTTTATCGTAATCAGTATGCTTATTTTTTGAAGTATATTTTGGCTCTGCAAGAAGAAA
TGACAATTTACCCAGATGCGCGCAGTCATGGAAATTTTCTGCACCGTGTGTTTGAAAAAGTCGTGCACGATCAATCGAAC
GAGCAATTCGACATCCGTCTAGAAAAAGCCATTCAGGAAGTAAGCTGTGAACCGGAGTTTGAAGCTCTTTATACCGAAAG
TGCCAAAGCATTGTTTGCTCATGAAGTTTTGCTTGACGCAGCGCGTGCGACAGGGCGTGTTCTAGAAAGAAATGATTTAG
TAGAAACTATTCAGGAAGAGGCTGTTTTTGGGCAAGAGAGTGCAGAATTTTTAACCTTATCAGACGGACGCAACCTTCAA
ATTCGAGGAAAAGTTGACCGTATTGACCGATTGAGAAGTAATGACAGTCTGGGAATTGTGGATTATAAATCAAGTGACAC
AGATTTTGATTTTCAAAAATTTTTCAATGGTTTGAATTCTCAATTACCTACGTATCTAATGGCATTGAAACAAGAAAAGT
GGACGAGTGATGAAGCACAGGTTTTTGGCGCCATGTATTTGCAGATGACCAATCCACTCGTACCTTTAGCGAAGACCAAG
TCGCAGAGTGATGCAGTCAAAGAGGTGATGAAAACGTTAGAATACAAGGGGCTATTTCTATCGGAGCAAGCTTATCAGCT
CAATGATTTGTATAATAAAAAGAAAGTCAATTTATTAAGTCAAGAAGAGCTAGAAACTTTGTTAGCTTATAATGCACTCT
TGTACCGTCGTGCTGCCGAGCAGATATTGACAGGGCATTTTAAGATTAATCCTTATACAGAAAATGGCAAAAGTATTGCA
CCTTTTGTGGAACAATATAAGTCCATTACAGGTTTTGAAGCCAATCTTCATCTTTCTAGTGCCCGACATTTAGTGAAATT
AGAAGGTAAGAACTCAACGGGTGAGAAGAAGCGTCAAGCATGGATAGAAAAGATGAAGGAGGAGTTAGAAAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

54.982

100

0.556