Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   I6I34_RS21625 Genome accession   NZ_CP068155
Coordinates   4223368..4224024 (+) Length   218 a.a.
NCBI ID   WP_000611338.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1077     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4218368..4229024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I34_RS21595 (I6I34_21620) dcyD 4219247..4220233 (+) 987 WP_001128219.1 D-cysteine desulfhydrase -
  I6I34_RS21600 (I6I34_21625) tcyL 4220248..4220916 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  I6I34_RS21605 (I6I34_21630) tcyN 4220913..4221665 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  I6I34_RS21610 (I6I34_21635) sdiA 4221895..4222617 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  I6I34_RS21615 (I6I34_21640) yecF 4222685..4222909 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  I6I34_RS21620 (I6I34_21645) yecU 4222896..4223072 (-) 177 WP_001302050.1 protein YecU -
  I6I34_RS25820 - 4223110..4223226 (-) 117 WP_001302039.1 hypothetical protein -
  I6I34_RS21625 (I6I34_21650) letA 4223368..4224024 (+) 657 WP_000611338.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  I6I34_RS21630 (I6I34_21655) uvrC 4224021..4225853 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  I6I34_RS21635 (I6I34_21660) pgsA 4225910..4226458 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6I34_RS21655 (I6I34_21680) - 4227157..4227894 (-) 738 Protein_4095 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23908.65 Da        Isoelectric Point: 6.9614

>NTDB_id=459072 I6I34_RS21625 WP_000611338.1 4223368..4224024(+) (letA) [Escherichia coli strain FDAARGOS_1077]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=459072 I6I34_RS21625 WP_000611338.1 4223368..4224024(+) (letA) [Escherichia coli strain FDAARGOS_1077]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGCGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGCCTTGAGGCGACGCGCAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACGGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGTGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CATTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.691

94.954

0.491
  letA Legionella pneumophila strain ERS1305867

51.691

94.954

0.491