Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6I34_RS17720 Genome accession   NZ_CP068155
Coordinates   3418743..3419480 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_1077     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3413743..3424480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I34_RS17690 (I6I34_17715) yfiL 3413889..3414266 (-) 378 WP_000976005.1 DUF2799 domain-containing protein -
  I6I34_RS17695 (I6I34_17720) aroF 3414476..3415546 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I6I34_RS17700 (I6I34_17725) tyrA 3415557..3416678 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I6I34_RS17705 (I6I34_17730) pheA 3416721..3417881 (-) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6I34_RS17710 (I6I34_17735) pheL 3417980..3418027 (-) 48 WP_010723158.1 phe operon leader peptide -
  I6I34_RS17715 (I6I34_17740) raiA 3418131..3418472 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I6I34_RS17720 (I6I34_17745) comL 3418743..3419480 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I6I34_RS17725 (I6I34_17750) rluD 3419615..3420595 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6I34_RS17730 (I6I34_17755) yfiH 3420592..3421323 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  I6I34_RS17735 (I6I34_17760) clpC 3421453..3424026 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=459058 I6I34_RS17720 WP_000197686.1 3418743..3419480(-) (comL) [Escherichia coli strain FDAARGOS_1077]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=459058 I6I34_RS17720 WP_000197686.1 3418743..3419480(-) (comL) [Escherichia coli strain FDAARGOS_1077]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376