Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   I6I87_RS10500 Genome accession   NZ_CP068109
Coordinates   2320802..2322085 (+) Length   427 a.a.
NCBI ID   WP_201664971.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1130     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2315802..2327085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I87_RS10475 (I6I87_10475) panD 2315930..2316310 (+) 381 WP_036589204.1 aspartate 1-decarboxylase -
  I6I87_RS10480 (I6I87_10480) - 2316410..2317036 (-) 627 WP_036603206.1 superoxide dismutase -
  I6I87_RS10485 (I6I87_10485) rdgB 2317558..2318208 (+) 651 WP_201664967.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  I6I87_RS10490 (I6I87_10490) tig 2318552..2319919 (+) 1368 WP_201664969.1 trigger factor -
  I6I87_RS10495 (I6I87_10495) clpP 2320071..2320745 (+) 675 WP_007117251.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  I6I87_RS10500 (I6I87_10500) clpX 2320802..2322085 (+) 1284 WP_201664971.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  I6I87_RS10505 (I6I87_10505) - 2322148..2322735 (-) 588 WP_227715520.1 HD domain-containing protein -
  I6I87_RS10510 (I6I87_10510) - 2322772..2323347 (-) 576 WP_201664975.1 hydrolase -
  I6I87_RS10515 (I6I87_10515) - 2323436..2323978 (-) 543 WP_201664977.1 hypothetical protein -
  I6I87_RS10520 (I6I87_10520) - 2324104..2324361 (-) 258 WP_007117256.1 YfhL family 4Fe-4S dicluster ferredoxin -
  I6I87_RS10525 (I6I87_10525) yegQ 2324463..2325896 (-) 1434 WP_101963962.1 tRNA 5-hydroxyuridine modification protein YegQ -
  I6I87_RS10530 (I6I87_10530) - 2326007..2326468 (-) 462 WP_227715521.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 46829.44 Da        Isoelectric Point: 4.7811

>NTDB_id=458905 I6I87_RS10500 WP_201664971.1 2320802..2322085(+) (clpX) [Moraxella osloensis strain FDAARGOS_1130]
MSKNDIEPHCSFCGKAKHEVKKLIAGQDANICNECIELCDDLIAESKSSGSDDSDTNERENWAARKLPTPKEIRSHLDEY
VIGQDKAKKTLAVAVYNHYKRLKVSEKLREDKTLTTLGAEDAMVELSKSNILLIGPTGSGKTLLAQTLARLLDVPFALAD
ATTLTEAGYVGEDVENIVQKLLQAAEFDVERAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPP
QGGRKHPNQEMIQVDTSNILVICGGAFAGLDNIIQQRTEKTGIGFNAEVKAKDSGKKTGELFKQVEPEDLIKFGLIPELI
GRLPVVATLEELDEEALVQILTEPKNALVKQYEYLFKMENATLSFTDDALVAIAKQALKRRTGARGLRSIIENALLDTMY
ELPSMTPGKTVTVNEAVIDNNQSPEIV

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=458905 I6I87_RS10500 WP_201664971.1 2320802..2322085(+) (clpX) [Moraxella osloensis strain FDAARGOS_1130]
ATGTCAAAAAATGACATTGAGCCACACTGCTCGTTTTGTGGTAAAGCCAAACATGAAGTCAAAAAGCTAATTGCAGGTCA
AGACGCCAATATCTGTAATGAGTGTATTGAACTGTGCGATGATTTAATCGCCGAATCCAAGTCATCGGGCAGTGATGATA
GTGATACCAATGAGCGTGAAAACTGGGCAGCGCGCAAATTGCCAACGCCCAAAGAAATCCGCAGCCACTTAGATGAGTAT
GTCATCGGTCAAGATAAAGCCAAAAAAACTTTGGCGGTAGCGGTTTACAACCACTACAAACGCTTAAAGGTCAGCGAAAA
ACTGCGTGAAGATAAAACATTGACGACACTTGGCGCTGAAGATGCGATGGTTGAGCTATCAAAAAGTAATATTTTGCTGA
TTGGCCCAACGGGCTCTGGCAAAACCTTACTGGCGCAGACCCTTGCCCGCCTACTTGATGTCCCATTTGCGCTCGCCGAT
GCCACTACCTTGACCGAAGCGGGTTATGTCGGTGAAGACGTGGAAAACATCGTACAAAAACTGTTACAAGCGGCAGAGTT
TGATGTCGAGAGAGCGCAAAAAGGCATTATCTATATCGATGAAATTGATAAAATCAGCCGTAAAAGCGAAAACCCTTCGA
TTACCCGTGATGTGTCGGGTGAAGGCGTACAGCAAGCGCTGTTAAAACTGATTGAAGGTACGGTTGCCAATATTCCACCG
CAAGGCGGTCGTAAGCACCCAAACCAAGAGATGATTCAGGTCGATACCAGTAATATCTTGGTGATTTGTGGCGGTGCGTT
TGCCGGTCTCGACAATATCATTCAACAGCGTACCGAAAAAACTGGTATCGGTTTTAACGCTGAGGTAAAAGCCAAAGACA
GTGGCAAAAAAACCGGTGAATTGTTCAAGCAAGTCGAGCCAGAAGATTTGATTAAATTTGGTCTGATTCCAGAGTTAATT
GGTCGTCTGCCTGTGGTGGCGACATTAGAAGAACTGGACGAAGAAGCGCTAGTACAAATCTTAACTGAGCCAAAAAATGC
ACTGGTCAAACAATACGAATACTTGTTTAAAATGGAAAATGCGACGTTATCATTTACCGATGATGCGCTAGTTGCGATTG
CCAAACAAGCGCTAAAGCGTCGTACCGGCGCGCGTGGCCTACGCTCCATTATTGAAAATGCGCTGCTCGATACCATGTAT
GAACTGCCTTCAATGACACCCGGCAAAACCGTCACAGTCAATGAGGCAGTGATTGATAATAACCAATCGCCAGAGATTGT
TTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(9-45)

AAA domain (Cdc48 subfamily) (AAA_2)

(128-325)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(332-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.77

98.595

0.56
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.769

97.424

0.543