Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   I6I87_RS00685 Genome accession   NZ_CP068109
Coordinates   148892..150730 (+) Length   612 a.a.
NCBI ID   WP_413816262.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1130     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 143892..155730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I87_RS00655 (I6I87_00655) hemN 144308..145786 (+) 1479 WP_201665236.1 oxygen-independent coproporphyrinogen III oxidase -
  I6I87_RS00660 (I6I87_00660) - 145900..146562 (+) 663 WP_083102193.1 Abi family protein -
  I6I87_RS00665 (I6I87_00665) - 146580..147185 (+) 606 WP_201665238.1 class I SAM-dependent methyltransferase -
  I6I87_RS00670 (I6I87_00670) - 147283..147795 (-) 513 WP_201665240.1 DUF4442 domain-containing protein -
  I6I87_RS00675 (I6I87_00675) - 147903..148286 (+) 384 WP_083106426.1 HNH endonuclease -
  I6I87_RS00680 (I6I87_00680) - 148329..148685 (+) 357 WP_040403802.1 hypothetical protein -
  I6I87_RS00685 (I6I87_00685) uvrC 148892..150730 (+) 1839 WP_413816262.1 excinuclease ABC subunit UvrC Machinery gene
  I6I87_RS00690 (I6I87_00690) - 150798..151154 (+) 357 WP_201665244.1 YkgJ family cysteine cluster protein -
  I6I87_RS00695 (I6I87_00695) - 151151..152143 (-) 993 WP_201665246.1 hypothetical protein -
  I6I87_RS00700 (I6I87_00700) fabF 152272..153579 (-) 1308 WP_201665248.1 beta-ketoacyl-ACP synthase II -
  I6I87_RS00705 (I6I87_00705) - 153820..155049 (-) 1230 WP_201666314.1 anhydro-N-acetylmuramic acid kinase -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 68628.93 Da        Isoelectric Point: 9.2865

>NTDB_id=458862 I6I87_RS00685 WP_413816262.1 148892..150730(+) (uvrC) [Moraxella osloensis strain FDAARGOS_1130]
MEIAAATADRKARLDHLIKRLPNLPGVYKMLGKNGDIIYVGKAKSLKSRVNSYFAKTIDHPKTRALVQRIDNIETIITRS
ETEALLLEQNLIKLHRPPYNVLLRDDKSYLYVFISADKPYPRLAYGRGKGQHQKGRFFGPFPSAHAAKQTLLMMQKMFMV
RQCTNAFFAQRQRPCLEYQIKRCKAPCVGLVSPEEYADDVNNTIRFLKGEGTDLQVKLVGKMEQAAEDMNFEQAALYRDQ
LSMLREVQAKQAVYTVKGEADIIAVASQAGITCVHVMNVRNGQVLGGNNYFPDVDSENDIADNLSEFVSSFYFQVSDDLP
EELIISHELPDQTAMTEALTETFGKKVTIKTKVREQRSEWLTLAQMNANNALQTKLGDYLEVKSRFNALNEVLKEALQGK
SLDRIECFDISHTMGEATIASCVVADQGGLRKRDYRQYAIHGITGGDDYAAMKQVLNRRYSKQPLPDLLLIDGGKGQLNM
AKDVLSELGILTQTLLVGVAKGEGRKAGLEVLHFIDREPLDLPADSKALHLIMHIRDEAHRFAITAHRKKRDKRRSSSVL
EAIPGLGEKRRRELLNHFGGLQQLLGASQDEIGQVNGIGKVMANTIYKVLHG

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=458862 I6I87_RS00685 WP_413816262.1 148892..150730(+) (uvrC) [Moraxella osloensis strain FDAARGOS_1130]
ATTGAAATTGCTGCAGCGACTGCCGACCGCAAAGCGCGATTGGATCACTTGATTAAGCGCCTGCCCAACTTACCAGGCGT
GTACAAAATGCTGGGCAAAAATGGCGACATCATCTATGTGGGCAAAGCCAAATCGCTTAAAAGCCGCGTCAATAGCTACT
TTGCCAAAACCATCGACCACCCCAAAACGCGGGCGCTGGTGCAACGTATCGACAACATCGAAACCATCATAACCCGCTCT
GAGACCGAAGCGCTGCTGCTTGAGCAAAACCTCATCAAGCTTCATCGCCCGCCCTACAACGTGCTACTGCGTGATGATAA
ATCTTATCTATACGTCTTTATCTCAGCCGATAAACCTTATCCAAGACTTGCCTATGGACGCGGTAAAGGACAGCACCAAA
AAGGCAGATTTTTTGGACCTTTTCCTTCGGCGCATGCCGCCAAACAAACCTTATTAATGATGCAAAAAATGTTTATGGTG
CGCCAATGTACCAATGCATTTTTTGCCCAGCGTCAACGCCCTTGCCTAGAGTACCAAATCAAACGCTGTAAAGCGCCGTG
TGTCGGGCTGGTGTCGCCCGAAGAGTATGCCGATGACGTCAATAACACCATTCGATTTTTAAAAGGTGAAGGCACGGATT
TGCAAGTCAAATTGGTGGGTAAAATGGAGCAAGCGGCTGAAGACATGAACTTTGAGCAAGCCGCCTTGTATCGCGACCAA
CTTTCGATGCTACGCGAAGTACAAGCCAAGCAAGCGGTGTATACGGTCAAAGGTGAAGCCGATATCATCGCCGTCGCCAG
TCAAGCGGGCATTACCTGTGTGCATGTTATGAATGTGCGTAATGGGCAGGTTTTGGGTGGCAACAATTATTTTCCTGATG
TGGATAGTGAAAACGACATAGCGGATAACTTGTCTGAGTTTGTCAGCTCGTTTTATTTTCAAGTCAGTGATGATTTACCC
GAAGAGCTGATTATAAGTCATGAGTTGCCCGACCAAACCGCGATGACAGAAGCCTTAACAGAAACCTTTGGCAAAAAGGT
GACGATAAAAACCAAAGTTCGTGAGCAGCGGAGCGAATGGCTCACCCTTGCCCAAATGAATGCCAACAACGCCCTGCAAA
CCAAATTGGGCGATTATTTGGAAGTCAAATCTCGCTTTAACGCGCTCAACGAGGTATTAAAAGAGGCGCTGCAAGGCAAA
TCGCTCGACCGTATCGAATGTTTTGATATCTCCCACACCATGGGTGAAGCCACCATCGCCAGCTGTGTGGTCGCTGACCA
AGGCGGACTACGCAAACGCGACTATCGCCAATATGCCATTCATGGCATCACGGGTGGTGATGACTATGCCGCCATGAAGC
AAGTATTAAACCGCCGCTATAGCAAACAGCCGCTGCCAGATTTATTGCTGATTGATGGCGGTAAGGGACAGCTTAATATG
GCAAAAGACGTACTGAGCGAGCTGGGGATTTTAACCCAGACCTTGCTCGTCGGAGTGGCAAAGGGCGAAGGTCGCAAGGC
TGGGCTTGAAGTACTGCATTTTATTGACCGTGAGCCGCTCGATTTGCCGGCTGATAGCAAGGCACTGCATTTGATTATGC
ATATCCGTGATGAAGCGCACCGCTTTGCCATTACCGCACACCGCAAAAAACGCGATAAACGCCGCTCAAGCTCAGTGCTA
GAAGCCATCCCGGGGTTGGGGGAAAAACGCCGCCGAGAGTTACTCAATCATTTTGGCGGCTTGCAGCAGCTGCTTGGTGC
GTCACAAGATGAAATTGGGCAAGTAAATGGCATTGGTAAGGTGATGGCCAATACCATTTATAAAGTGTTGCATGGCTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(219-246)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(400-544)

GIY-YIG catalytic domain (GIY-YIG)

(26-100)

Helix-hairpin-helix motif (HHH_2)

(563-608)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.498

99.837

0.364
  uvrC Streptococcus pneumoniae R6

36.334

99.837

0.363
  uvrC Streptococcus pneumoniae D39

36.334

99.837

0.363