Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   I6J14_RS10410 Genome accession   NZ_CP068057
Coordinates   2085848..2086489 (+) Length   213 a.a.
NCBI ID   WP_003052152.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2080848..2091489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS10390 (I6J14_10390) - 2081403..2082143 (+) 741 WP_003052160.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  I6J14_RS10395 (I6J14_10395) pknB 2082140..2084035 (+) 1896 WP_003052158.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  I6J14_RS10400 (I6J14_10400) liaF 2084162..2084854 (+) 693 WP_003052156.1 cell wall-active antibiotics response protein LiaF -
  I6J14_RS10405 (I6J14_10405) - 2084851..2085855 (+) 1005 WP_003052154.1 sensor histidine kinase -
  I6J14_RS10410 (I6J14_10410) vraR 2085848..2086489 (+) 642 WP_003052152.1 response regulator transcription factor Regulator
  I6J14_RS10415 (I6J14_10415) - 2086526..2087926 (+) 1401 WP_115253070.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  I6J14_RS10420 (I6J14_10420) - 2087926..2088285 (+) 360 WP_003052148.1 S1 RNA-binding domain-containing protein -
  I6J14_RS10425 (I6J14_10425) cysK 2088436..2089371 (-) 936 WP_003052146.1 cysteine synthase A -
  I6J14_RS10430 (I6J14_10430) - 2089475..2090113 (-) 639 WP_003052144.1 YigZ family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23872.53 Da        Isoelectric Point: 4.8864

>NTDB_id=458738 I6J14_RS10410 WP_003052152.1 2085848..2086489(+) (vraR) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MNNIRVILVDDHEMVRMGLKSFLNLQPDIDVIGEASNGREGVELALALKPDVLVMDLVMPELGGVEATLKILDKWKDAKI
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILYLLA
KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=458738 I6J14_RS10410 WP_003052152.1 2085848..2086489(+) (vraR) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGAATAATATAAGAGTGATACTAGTGGATGATCACGAAATGGTCCGTATGGGACTTAAAAGTTTTTTGAATTTACAACC
AGATATCGACGTTATTGGCGAAGCTTCTAATGGACGTGAGGGAGTTGAGTTGGCCTTAGCCTTAAAACCAGATGTGCTGG
TTATGGATTTGGTGATGCCAGAACTAGGTGGTGTTGAGGCGACTTTGAAAATCCTCGATAAGTGGAAAGATGCCAAAATA
TTGGTCTTGACCTCTTATTTAGATAATGAGAAAATTTACCCTGTCATTGATGCTGGTGCTAAAGGTTACATGTTAAAGAC
TTCTAGTGCAGCCGAAATTTTAAATGCTATTCGGAAAGTTTCAAAAGGTGAATTGGCCATTGAAACAGAGGTAGACAAAA
AAATTAAAGCGCATGATCAACACCCTGATTTGCATGAAGAACTAACCGCGCGCGAGTATGATATTTTATATCTTTTAGCT
AAAGGGTATGATAATCAAACTATAGCGGATGAACTTTTCATCTCCTTGAAAACCGTTAAAACGCATGTATCTAATATTCT
TGCTAAGCTAGAAGTTGATGACCGAACTCAAGCTGTTGTATACGCTTTCCGACACCATTTAGTCCCCCAAGATGATAATT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

51.208

97.183

0.498
  degU Bacillus subtilis subsp. subtilis str. 168

34.956

100

0.371