Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   I6J14_RS09975 Genome accession   NZ_CP068057
Coordinates   1993779..1994813 (+) Length   344 a.a.
NCBI ID   WP_003052473.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1988779..1999813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS09945 (I6J14_09945) tsaE 1989846..1990289 (+) 444 WP_115253266.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  I6J14_RS09950 (I6J14_09950) - 1990282..1990803 (+) 522 WP_003052483.1 GNAT family N-acetyltransferase -
  I6J14_RS09955 (I6J14_09955) - 1990815..1992083 (+) 1269 WP_115253098.1 LCP family protein -
  I6J14_RS09960 (I6J14_09960) - 1992243..1992563 (-) 321 WP_003052479.1 hypothetical protein -
  I6J14_RS09965 (I6J14_09965) - 1992560..1992979 (-) 420 WP_115253097.1 HIT family protein -
  I6J14_RS09970 (I6J14_09970) pptA 1993051..1993776 (+) 726 WP_003052475.1 ABC transporter ATP-binding protein Regulator
  I6J14_RS09975 (I6J14_09975) pptB 1993779..1994813 (+) 1035 WP_003052473.1 ABC transporter permease Regulator
  I6J14_RS09980 (I6J14_09980) - 1994878..1995669 (+) 792 WP_115253096.1 phosphotransferase family protein -
  I6J14_RS09985 (I6J14_09985) trmB 1995669..1996304 (+) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  I6J14_RS09995 (I6J14_09995) - 1996657..1997762 (+) 1106 WP_115253095.1 IS3-like element ISSdy2 family transposase -
  I6J14_RS10000 (I6J14_10000) rimP 1998054..1998503 (+) 450 WP_037585009.1 ribosome maturation factor RimP -
  I6J14_RS10005 (I6J14_10005) nusA 1998646..1999803 (+) 1158 WP_003052330.1 transcription termination factor NusA -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40277.63 Da        Isoelectric Point: 10.2559

>NTDB_id=458733 I6J14_RS09975 WP_003052473.1 1993779..1994813(+) (pptB) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MKALFLKRRQDFQKQQSKYLRYVFNDHFVLVLMFLLGFCLVQYSQLLKHFPSNHWPIWLFLMVGMLLLLHLGSVATYLEE
PDHHFLLPKEEAVVAHIKQAERSALVIWGCLQTAILIFLYPIFNRLGFSLVTFALLLLGLLALKRLLLGYKVRQFLKKDG
LDWEKVIAFESNRKQAILKFYSLFTNVKGISTKVKKRSYLNPLLKLVKENSKHLWLTLYLKAFLRSSDYLGLFLRLLLLS
SLALLFISNTYLSVALALVFNYLILFQLLSLYYHYDYHYMTSLYPEKHQGKRANLLTFLRGLSCLILVINLLLCHSLEKA
LILVVVMGVITLFYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=458733 I6J14_RS09975 WP_003052473.1 1993779..1994813(+) (pptB) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAGAGCAAATACCTGCGCTATGTCTTTAATGACCA
TTTTGTCTTGGTCCTGATGTTTTTGCTTGGTTTTTGCTTGGTGCAATACAGCCAGTTATTGAAGCATTTTCCTAGTAATC
ATTGGCCGATATGGCTCTTTCTCATGGTGGGGATGCTGTTATTGCTTCACTTGGGCTCGGTGGCAACTTATTTAGAAGAG
CCTGATCACCATTTTCTACTTCCGAAAGAAGAAGCTGTGGTTGCTCATATTAAACAAGCTGAGCGCTCTGCTCTTGTGAT
TTGGGGCTGTTTACAGACAGCTATCCTCATCTTTTTATATCCGATCTTCAATCGCCTAGGCTTCTCCCTAGTTACTTTTG
CTCTTTTACTTTTGGGATTACTAGCTCTTAAACGACTCCTTTTGGGGTATAAAGTAAGACAATTTTTAAAGAAAGATGGA
CTGGATTGGGAAAAAGTCATTGCTTTTGAGAGTAATCGTAAACAGGCTATCTTAAAGTTTTATTCTCTTTTCACAAATGT
TAAGGGAATTTCCACAAAGGTTAAGAAAAGATCTTATTTAAATCCTCTTCTAAAATTGGTAAAAGAAAATAGTAAGCACC
TCTGGCTAACGCTCTATTTAAAAGCTTTTTTACGAAGTTCAGACTATTTAGGACTCTTTTTACGCTTATTATTATTGAGT
TCCCTAGCCTTGCTGTTTATTTCTAACACTTACCTATCAGTGGCTTTAGCCCTGGTCTTTAATTATTTGATTCTTTTTCA
ATTGTTGTCTCTTTACTACCATTACGATTACCACTACATGACTAGTCTTTATCCAGAGAAACATCAAGGGAAGCGGGCGA
ATCTATTGACTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTTATCAACCTCTTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGTGGTCATGGGAGTCATTACACTTTTCTATCTCCCTTATAAGTTGAAGAAGATAATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.802

100

0.468

  pptB Streptococcus salivarius strain HSISS4

46.512

100

0.465