Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   I6J15_RS08525 Genome accession   NZ_CP068056
Coordinates   1701751..1703535 (-) Length   594 a.a.
NCBI ID   WP_111713076.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1696751..1708535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS08510 (I6J15_08510) - 1697538..1698140 (-) 603 WP_111712732.1 nitroreductase family protein -
  I6J15_RS08515 (I6J15_08515) - 1698263..1699993 (-) 1731 WP_111712731.1 hypothetical protein -
  I6J15_RS08520 (I6J15_08520) - 1700097..1701737 (-) 1641 WP_111712730.1 AbiH family protein -
  I6J15_RS08525 (I6J15_08525) uvrC 1701751..1703535 (-) 1785 WP_111713076.1 excinuclease ABC subunit UvrC Machinery gene
  I6J15_RS08530 (I6J15_08530) - 1703655..1705031 (-) 1377 WP_111712729.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  I6J15_RS08535 (I6J15_08535) - 1705235..1706260 (-) 1026 WP_111712728.1 YeiH family protein -
  I6J15_RS08540 (I6J15_08540) - 1706361..1707227 (+) 867 WP_111712727.1 LysR family transcriptional regulator -
  I6J15_RS08545 (I6J15_08545) - 1707307..1707978 (+) 672 WP_058692836.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 68544.20 Da        Isoelectric Point: 9.3708

>NTDB_id=458622 I6J15_RS08525 WP_111713076.1 1701751..1703535(-) (uvrC) [Streptococcus lutetiensis strain FDAARGOS_1158]
MNELIKHKLELLPDSPGCYIHKDKNGKIIYVGKAKNLKNRVRSYFHGSHNTKTELLVSEIEDFEYIVTGSNTEALLLEIN
LIQENLPKYNIKLKDDKSYPFIKITVNEQYPRLMITRQIKKDGAMYFGPYPDSGAATEIKRLLDRIFPFKKCTNPANKVC
FYYHLGQCKAHTICHVDHDYFVAMAQDVKNFLNGQDNKIVDGLKEKMQKASDMLEFERAAEYRDLLQAISTLRTKQRVMN
QDMMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYVGQFYRDSKHFIPKEVFIPQDIDEELVKV
VVDTKVIKPQRGEKKQLVNLATKNARVSLQQKFDLLEKDIRKTHGAIENISELLNIPKPVRIEAFDNSNIQGTSPVAGMV
VFVNGKPSKKDYRKFKIKTVVGPDDYASMREVIYRRYSRVMKDGLTPPDLIIIDGGQGQVNVARDVIENKLGLDIPIAGL
QKNDKHQTHELLFGDPLEVVELPRNSEEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSKLDGIAGLGPKRKQLLMKHFKS
LPSIQKADVDDIINCGVPRNVAIAVKEKLAEEKK

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=458622 I6J15_RS08525 WP_111713076.1 1701751..1703535(-) (uvrC) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATGAATGAACTGATTAAACATAAATTGGAGTTGCTGCCAGACAGCCCTGGTTGTTATATCCATAAAGATAAAAACGGCAA
GATTATCTATGTCGGAAAAGCCAAGAATCTCAAGAATCGTGTGCGCAGCTATTTTCATGGTAGCCATAATACCAAGACCG
AACTCTTGGTTTCTGAGATTGAAGATTTTGAATACATAGTTACTGGGTCAAATACAGAAGCCCTTCTTCTTGAAATCAAT
CTGATTCAAGAAAACTTGCCAAAGTATAACATCAAGCTAAAAGATGACAAATCTTACCCATTTATCAAAATCACGGTGAA
TGAACAGTACCCACGCTTGATGATTACCCGACAAATCAAAAAAGATGGTGCCATGTATTTTGGTCCCTACCCTGATTCAG
GGGCAGCAACAGAAATCAAACGTCTGCTAGACCGCATTTTCCCATTTAAAAAATGTACAAATCCTGCTAACAAGGTTTGC
TTTTATTACCATTTAGGTCAGTGTAAAGCTCATACCATCTGTCATGTGGACCATGATTATTTTGTTGCCATGGCGCAAGA
TGTGAAGAATTTCTTGAATGGTCAAGATAACAAAATTGTTGATGGCTTAAAAGAAAAGATGCAAAAAGCTTCTGACATGC
TGGAGTTTGAACGCGCAGCAGAATACCGTGATTTGCTGCAAGCCATCTCAACTCTTCGTACTAAACAACGTGTCATGAAT
CAAGACATGATGGACCGTGATATTTTTGGATATTATGTCGATAAAGGCTGGATGTGTGTGCAGGTTTTCTTTGTTCGCCA
AGGAAAACTCATTCAGCGTGATGTCAACATGTTTCCTTACTACAATGACCCAGAAGAGGATTTCTTGACTTACGTCGGAC
AATTTTACCGCGACAGCAAGCATTTTATTCCAAAAGAAGTCTTTATTCCTCAGGACATTGACGAAGAATTAGTTAAAGTA
GTTGTTGATACCAAAGTCATCAAACCACAACGTGGTGAGAAGAAGCAGCTGGTAAATCTTGCGACAAAAAATGCGCGTGT
CAGCCTGCAACAAAAATTTGACCTGCTAGAAAAAGATATCCGCAAAACACATGGCGCTATTGAAAATATCAGTGAATTAC
TCAATATTCCAAAACCAGTGCGCATTGAAGCCTTTGATAACTCAAATATTCAAGGAACAAGCCCAGTTGCGGGGATGGTT
GTCTTTGTAAATGGGAAACCAAGTAAGAAAGATTACCGTAAATTTAAAATTAAAACCGTTGTCGGCCCAGATGACTATGC
CAGCATGCGTGAAGTCATTTATCGTAGATACAGTCGCGTGATGAAAGACGGATTGACTCCGCCAGATTTGATCATCATCG
ATGGTGGACAAGGTCAGGTCAATGTGGCGCGCGATGTCATTGAAAATAAACTTGGACTCGATATTCCAATCGCTGGTCTG
CAAAAAAATGACAAGCACCAAACGCACGAACTACTCTTTGGTGACCCATTAGAAGTGGTCGAATTGCCACGAAATTCTGA
AGAGTTTTTCCTCTTACAGCGTATCCAAGACGAAGTTCACCGATTTGCCATTACTTTCCACCGTCAACTCCGTTCTAAAA
ATTCATTCTCATCAAAACTCGATGGCATTGCTGGGCTTGGCCCAAAGCGCAAGCAATTACTCATGAAACACTTCAAGAGC
TTGCCAAGCATTCAAAAAGCAGACGTGGATGACATCATCAACTGTGGTGTCCCACGAAACGTTGCCATAGCTGTTAAGGA
AAAATTGGCTGAGGAGAAGAAATAG

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-524)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrB/uvrC motif (UVR)

(199-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

79.117

99.158

0.785
  uvrC Streptococcus pneumoniae R6

78.947

99.158

0.783
  uvrC Streptococcus pneumoniae D39

78.947

99.158

0.783