Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   I6J15_RS07785 Genome accession   NZ_CP068056
Coordinates   1550991..1552061 (-) Length   356 a.a.
NCBI ID   WP_111712796.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1545991..1557061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS07765 (I6J15_07765) - 1546436..1548415 (+) 1980 WP_111712798.1 FtsX-like permease family protein -
  I6J15_RS07770 (I6J15_07770) braR 1548519..1549181 (+) 663 WP_020916724.1 DNA-binding response regulator Regulator
  I6J15_RS07775 (I6J15_07775) - 1549178..1550125 (+) 948 WP_020916723.1 sensor histidine kinase -
  I6J15_RS07780 (I6J15_07780) - 1550203..1550883 (+) 681 WP_111712797.1 XRE family transcriptional regulator -
  I6J15_RS07785 (I6J15_07785) xerS 1550991..1552061 (-) 1071 WP_111712796.1 tyrosine recombinase XerS Machinery gene
  I6J15_RS07790 (I6J15_07790) - 1552589..1552897 (-) 309 WP_061407755.1 ATP-binding cassette domain-containing protein -
  I6J15_RS09230 - 1552920..1553093 (-) 174 WP_004231642.1 hypothetical protein -
  I6J15_RS09235 - 1553236..1553412 (-) 177 WP_233422901.1 energy-coupling factor transporter transmembrane protein EcfT -
  I6J15_RS07800 (I6J15_07800) - 1553445..1553570 (+) 126 WP_020916719.1 helix-turn-helix domain-containing protein -
  I6J15_RS07805 (I6J15_07805) - 1553907..1554572 (+) 666 WP_111712795.1 hypothetical protein -
  I6J15_RS07810 (I6J15_07810) - 1554686..1555522 (-) 837 WP_020916717.1 VanW family protein -
  I6J15_RS07815 (I6J15_07815) - 1555527..1556069 (-) 543 WP_020916716.1 YqeG family HAD IIIA-type phosphatase -
  I6J15_RS09430 - 1556321..1556542 (-) 222 Protein_1513 DUF3307 domain-containing protein -
  I6J15_RS09435 - 1556714..1556809 (-) 96 Protein_1514 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41341.54 Da        Isoelectric Point: 9.7173

>NTDB_id=458618 I6J15_RS07785 WP_111712796.1 1550991..1552061(-) (xerS) [Streptococcus lutetiensis strain FDAARGOS_1158]
MKREKLLEKIDELKTIMPWYVLDYYQSKLSVPYSFTTLYEYLKEYRRFFEWILESGISNAKKIADVELTTLEHLSKKDME
SFVLYLRERPSLNTYSTNQGVSQTTINRTLSALSSLFKYLTEEVEDENGDPYFYRNVMKKISTKKKKETLAARAENIKGK
LFLGDETMAFIEYIDKEYQNKLSHRALSSFQKNKERDLAIIALLLASGVRLSEAVNLDLKDLHLNMMVIEVTRKGGKRDS
VNIAAFAKPYLEEYLKIRAPRYKAEKQDQALFLTEYRGVPNRIDASSIEKLVAKYSQDFKVRVTPHKLRHTLATRLYGAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=458618 I6J15_RS07785 WP_111712796.1 1550991..1552061(-) (xerS) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATGAAACGTGAAAAATTACTCGAAAAAATTGATGAACTTAAAACAATCATGCCTTGGTATGTCCTAGACTATTACCAATC
AAAACTTTCTGTACCCTACAGTTTTACAACCTTGTACGAATACCTCAAAGAATATAGACGATTTTTCGAATGGATTCTTG
AATCTGGTATTTCAAATGCTAAAAAAATTGCTGATGTTGAGTTAACGACTTTAGAGCATTTGTCTAAAAAAGATATGGAA
TCCTTCGTTCTTTATCTTCGTGAACGTCCTTCGTTAAATACCTATTCAACCAATCAAGGAGTTTCACAAACCACTATCAA
TCGTACCTTATCAGCACTTTCGAGCTTATTTAAGTACCTGACAGAAGAGGTCGAGGATGAAAATGGTGACCCCTACTTCT
ATCGAAATGTCATGAAAAAGATATCAACGAAGAAAAAGAAAGAAACCCTGGCAGCTCGCGCTGAAAATATTAAAGGAAAG
CTCTTCTTAGGTGATGAAACAATGGCCTTTATCGAGTATATCGATAAAGAGTACCAAAATAAGCTCTCTCACCGTGCCCT
CTCCTCCTTCCAGAAGAACAAGGAGCGAGATTTGGCAATTATCGCCCTTCTTCTTGCCTCTGGTGTTCGTCTTTCTGAGG
CTGTTAATCTTGATTTGAAGGATTTACATCTGAATATGATGGTTATCGAAGTCACTCGTAAGGGGGGTAAACGCGATTCT
GTGAATATTGCTGCTTTTGCCAAACCTTACCTTGAGGAGTATTTAAAAATTCGAGCGCCACGCTATAAAGCAGAAAAACA
AGATCAGGCTTTATTTTTAACGGAATACCGTGGTGTTCCAAATCGTATCGATGCATCAAGTATCGAAAAATTAGTAGCCA
AATACTCACAAGACTTTAAAGTTCGAGTGACACCCCACAAGCTCCGTCACACTCTAGCAACGCGATTGTATGGCGCTACT
AAATCTCAAGTTTTGGTCAGCCACCAATTGGGACATGCTAGCACCCAGGTAACTGACTTATATACCCACATCGTTAACGA
TGAACAAAAGAATGCCCTTGATAAATTGTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831