Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   KSO_RS01695 Genome accession   NC_020272
Coordinates   332578..332697 (-) Length   39 a.a.
NCBI ID   WP_015387559.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens IT-45     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 327578..337697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS01655 (KSO_001730) speE 327972..328802 (+) 831 WP_003151052.1 spermidine synthase -
  KSO_RS01660 (KSO_001735) speB 328862..329734 (+) 873 WP_003151054.1 agmatinase -
  KSO_RS01665 (KSO_001740) - 329904..330122 (+) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  KSO_RS01675 (KSO_001750) - 330713..331225 (-) 513 WP_015387558.1 stage II sporulation protein M -
  KSO_RS01680 (KSO_001755) - 331269..331550 (-) 282 WP_014306021.1 hypothetical protein -
  KSO_RS01685 (KSO_001760) - 331959..332162 (-) 204 WP_003151062.1 hypothetical protein -
  KSO_RS01690 (KSO_001765) - 332176..332379 (-) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  KSO_RS01695 (KSO_001770) phrF 332578..332697 (-) 120 WP_015387559.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  KSO_RS01700 (KSO_001775) rapF 332681..333826 (-) 1146 WP_015387560.1 tetratricopeptide repeat protein Regulator
  KSO_RS01705 (KSO_001780) - 334118..334546 (+) 429 WP_003151069.1 DUF1934 domain-containing protein -
  KSO_RS01710 (KSO_001785) argS 334543..336213 (+) 1671 WP_003151071.1 arginine--tRNA ligase -
  KSO_RS01715 (KSO_001790) narK 336348..337538 (+) 1191 WP_014306018.1 nitrate transporter NarK -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4252.07 Da        Isoelectric Point: 8.0195

>NTDB_id=45857 KSO_RS01695 WP_015387559.1 332578..332697(-) (phrF) [Bacillus amyloliquefaciens IT-45]
MKLKYKLALTCLAVGTIFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=45857 KSO_RS01695 WP_015387559.1 332578..332697(-) (phrF) [Bacillus amyloliquefaciens IT-45]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTAGCGGTAGGCACTATTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterProScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487
  phrF Bacillus subtilis subsp. subtilis str. 168

66.667

69.231

0.462

Multiple sequence alignment