Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   JJE78_RS13415 Genome accession   NZ_CP068041
Coordinates   2753222..2753878 (-) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain XJW9B277     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2748222..2758878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJE78_RS13385 (JJE78_13300) yecA 2749474..2750139 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  JJE78_RS13405 (JJE78_13320) pgsA 2750788..2751336 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JJE78_RS13410 (JJE78_13325) uvrC 2751393..2753225 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  JJE78_RS13415 (JJE78_13330) letA 2753222..2753878 (-) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  JJE78_RS26765 - 2754020..2754136 (+) 117 WP_001302039.1 hypothetical protein -
  JJE78_RS13420 (JJE78_13335) yecU 2754174..2754350 (+) 177 WP_000590344.1 protein YecU -
  JJE78_RS13425 (JJE78_13340) yecF 2754337..2754561 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  JJE78_RS13430 (JJE78_13345) sdiA 2754629..2755351 (-) 723 WP_001154260.1 transcriptional regulator SdiA -
  JJE78_RS13435 (JJE78_13350) tcyN 2755581..2756333 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  JJE78_RS13440 (JJE78_13355) tcyL 2756330..2756998 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  JJE78_RS13445 (JJE78_13360) dcyD 2757013..2757999 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=458486 JJE78_RS13415 WP_000611328.1 2753222..2753878(-) (letA) [Escherichia coli strain XJW9B277]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=458486 JJE78_RS13415 WP_000611328.1 2753222..2753878(-) (letA) [Escherichia coli strain XJW9B277]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGTCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482