Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   C663_RS19820 Genome accession   NC_020244
Coordinates   3993204..3993998 (-) Length   264 a.a.
NCBI ID   WP_015483958.1    Uniprot ID   -
Organism   Bacillus subtilis XF-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3988204..3998998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS19800 (C663_3951) rocD 3988660..3989865 (-) 1206 WP_041518158.1 ornithine aminotransferase -
  C663_RS19805 (C663_3952) rocR 3990106..3991491 (+) 1386 WP_015385164.1 arginine utilization regulatory protein RocR -
  C663_RS19810 (C663_3953) - 3991473..3991658 (-) 186 Protein_3997 ATP-binding protein -
  C663_RS21485 - 3991774..3991900 (-) 127 Protein_3998 hypothetical protein -
  C663_RS19815 (C663_3954) htrA 3991920..3993122 (-) 1203 WP_015385166.1 serine protease HtrC Regulator
  C663_RS19820 (C663_3955) vicX 3993204..3993998 (-) 795 WP_015483958.1 MBL fold metallo-hydrolase Regulator
  C663_RS19825 (C663_3956) walI 3994020..3994862 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  C663_RS19830 (C663_3957) walH 3994849..3996216 (-) 1368 WP_041518280.1 WalRK two-component regulatory system regulator WalH -
  C663_RS19835 (C663_3958) walK 3996206..3998041 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  C663_RS19840 (C663_3959) walR 3998049..3998756 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29282.29 Da        Isoelectric Point: 6.0287

>NTDB_id=45845 C663_RS19820 WP_015483958.1 3993204..3993998(-) (vicX) [Bacillus subtilis XF-1]
MSLQFSVLASGSTGNAFYLETENHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=45845 C663_RS19820 WP_015483958.1 3993204..3993998(-) (vicX) [Bacillus subtilis XF-1]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGAATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTTTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAATAACATGAAGGAGCTGGCAAGAATGTCCGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACAGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53

Multiple sequence alignment