Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CJSA_RS02980 Genome accession   NC_017279
Coordinates   556545..557195 (-) Length   216 a.a.
NCBI ID   WP_014516728.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni IA3902     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 551545..562195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJSA_RS02945 (CJSA_0555) - 551923..552927 (+) 1005 WP_002852264.1 membrane protein -
  CJSA_RS02950 (CJSA_0556) tlyA 552924..553685 (+) 762 WP_002852328.1 TlyA family RNA methyltransferase -
  CJSA_RS02955 (CJSA_0557) ribF 553651..554505 (+) 855 WP_002852206.1 bifunctional riboflavin kinase/FAD synthetase -
  CJSA_RS02960 (CJSA_0558) cmoA 554492..555202 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  CJSA_RS02965 (CJSA_0559) - 555192..555413 (-) 222 WP_002859102.1 EexN family lipoprotein -
  CJSA_RS02970 (CJSA_0560) - 555410..555844 (-) 435 WP_002855128.1 EexN family lipoprotein -
  CJSA_RS02975 (CJSA_0561) - 555902..556534 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  CJSA_RS02980 (CJSA_0562) CJE0566 556545..557195 (-) 651 WP_014516728.1 DNA/RNA non-specific endonuclease Regulator
  CJSA_RS02985 (CJSA_0563) nth 557192..557818 (-) 627 WP_004306729.1 endonuclease III -
  CJSA_RS02990 (CJSA_0564) peb4 557899..558720 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  CJSA_RS02995 (CJSA_0565) fbaA 558720..559784 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  CJSA_RS03000 (CJSA_0566) - 559879..561321 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25405.01 Da        Isoelectric Point: 9.5471

>NTDB_id=45844 CJSA_RS02980 WP_014516728.1 556545..557195(-) (CJE0566) [Campylobacter jejuni subsp. jejuni IA3902]
MKIFIFLLAISLNIFALESYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=45844 CJSA_RS02980 WP_014516728.1 556545..557195(-) (CJE0566) [Campylobacter jejuni subsp. jejuni IA3902]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAATCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment