Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   C663_RS19475 Genome accession   NC_020244
Coordinates   3918853..3919542 (-) Length   229 a.a.
NCBI ID   WP_015483924.1    Uniprot ID   -
Organism   Bacillus subtilis XF-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3913853..3924542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS19455 yxeA 3914758..3915105 (-) 348 WP_041518142.1 YxeA family protein -
  C663_RS19460 (C663_3882) yxdM 3915119..3916987 (-) 1869 WP_015385107.1 ABC transporter permease YxdM -
  C663_RS19465 (C663_3883) yxdL 3916962..3917735 (-) 774 WP_014115765.1 ABC transporter ATP-binding protein YxdL -
  C663_RS19470 (C663_3884) yxdK 3917879..3918856 (-) 978 WP_015385109.1 two-component system sensor histidine kinase YxdK -
  C663_RS19475 (C663_3885) braR 3918853..3919542 (-) 690 WP_015483924.1 two-component system response regulator YxdJ Regulator
  C663_RS19480 (C663_3886) iolJ 3919650..3920522 (-) 873 WP_015483925.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  C663_RS19485 (C663_3887) iolI 3920543..3921379 (-) 837 WP_015483926.1 2-keto-myo-inositol isomerase -
  C663_RS19490 (C663_3888) iolH 3921465..3922334 (-) 870 WP_014478480.1 sugar phosphate isomerase/epimerase -
  C663_RS19495 (C663_3889) iolG 3922354..3923388 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26630.37 Da        Isoelectric Point: 4.8564

>NTDB_id=45843 C663_RS19475 WP_015483924.1 3918853..3919542(-) (braR) [Bacillus subtilis XF-1]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTTVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=45843 C663_RS19475 WP_015483924.1 3918853..3919542(-) (braR) [Bacillus subtilis XF-1]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAACTGTTCTTGATGTCTTTTTGCGGGAGAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCAATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTAATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTCCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTCTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment