Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JKF55_RS18240 Genome accession   NZ_CP068035
Coordinates   3805957..3806694 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain U90     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3800957..3811694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKF55_RS18225 (JKF55_18225) clpC 3801411..3803984 (-) 2574 WP_063102763.1 ATP-dependent chaperone ClpB Regulator
  JKF55_RS18230 (JKF55_18230) yfiH 3804114..3804845 (-) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  JKF55_RS18235 (JKF55_18235) rluD 3804842..3805822 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JKF55_RS18240 (JKF55_18240) comL 3805957..3806694 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JKF55_RS18245 (JKF55_18245) raiA 3806965..3807306 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JKF55_RS18250 (JKF55_18250) pheL 3807410..3807457 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  JKF55_RS18255 (JKF55_18255) pheA 3807556..3808716 (+) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  JKF55_RS18260 (JKF55_18260) tyrA 3808759..3809880 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JKF55_RS18265 (JKF55_18265) aroF 3809891..3810961 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JKF55_RS18270 (JKF55_18270) yfiL 3811171..3811536 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=458425 JKF55_RS18240 WP_000197686.1 3805957..3806694(+) (comL) [Escherichia coli strain U90]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=458425 JKF55_RS18240 WP_000197686.1 3805957..3806694(+) (comL) [Escherichia coli strain U90]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376