Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   JJT18_RS08970 Genome accession   NZ_CP067994
Coordinates   1888795..1889451 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain CV601     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1883795..1894451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJT18_RS08940 (JJT18_08940) dcyD 1884674..1885660 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  JJT18_RS08945 (JJT18_08945) tcyL 1885675..1886343 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  JJT18_RS08950 (JJT18_08950) tcyN 1886340..1887092 (+) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  JJT18_RS08955 (JJT18_08955) sdiA 1887322..1888044 (+) 723 WP_001152715.1 transcriptional regulator SdiA -
  JJT18_RS08960 (JJT18_08960) yecF 1888112..1888336 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  JJT18_RS08965 (JJT18_08965) yecU 1888323..1888499 (-) 177 WP_000590347.1 protein YecU -
  JJT18_RS22975 - 1888582..1888653 (-) 72 Protein_1768 transcriptional regulator -
  JJT18_RS08970 (JJT18_08970) letA 1888795..1889451 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  JJT18_RS08975 (JJT18_08975) uvrC 1889448..1891280 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  JJT18_RS08980 (JJT18_08980) pgsA 1891337..1891885 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JJT18_RS09000 (JJT18_09000) yecA 1892535..1893200 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=458325 JJT18_RS08970 WP_000611335.1 1888795..1889451(+) (letA) [Escherichia coli strain CV601]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=458325 JJT18_RS08970 WP_000611335.1 1888795..1889451(+) (letA) [Escherichia coli strain CV601]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486