Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JJT18_RS05545 Genome accession   NZ_CP067994
Coordinates   1152074..1152811 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CV601     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1147074..1157811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJT18_RS05515 (JJT18_05515) yfiL 1147232..1147597 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  JJT18_RS05520 (JJT18_05520) aroF 1147807..1148877 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JJT18_RS05525 (JJT18_05525) tyrA 1148888..1150009 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JJT18_RS05530 (JJT18_05530) pheA 1150052..1151212 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JJT18_RS05535 (JJT18_05535) pheL 1151311..1151358 (-) 48 WP_010723158.1 phe operon leader peptide -
  JJT18_RS05540 (JJT18_05540) raiA 1151462..1151803 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JJT18_RS05545 (JJT18_05545) comL 1152074..1152811 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JJT18_RS05550 (JJT18_05550) rluD 1152946..1153926 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JJT18_RS05555 (JJT18_05555) yfiH 1153923..1154654 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  JJT18_RS05560 (JJT18_05560) clpC 1154784..1157357 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=458312 JJT18_RS05545 WP_000197686.1 1152074..1152811(-) (comL) [Escherichia coli strain CV601]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=458312 JJT18_RS05545 WP_000197686.1 1152074..1152811(-) (comL) [Escherichia coli strain CV601]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376