Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   THTHE16_RS10005 Genome accession   NC_017272
Coordinates   1857093..1859126 (+) Length   677 a.a.
NCBI ID   WP_014510983.1    Uniprot ID   -
Organism   Thermus thermophilus SG0.5JP17-16     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1852093..1864126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THTHE16_RS09970 (Ththe16_1959) - 1852869..1853333 (+) 465 WP_014510978.1 hypothetical protein -
  THTHE16_RS09975 (Ththe16_1960) pfkA 1853310..1854278 (-) 969 WP_014510979.1 6-phosphofructokinase -
  THTHE16_RS09980 (Ththe16_1961) rsmI 1854275..1855069 (-) 795 WP_041444954.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  THTHE16_RS09985 (Ththe16_1962) - 1855071..1855565 (-) 495 WP_014510981.1 hypothetical protein -
  THTHE16_RS09990 (Ththe16_1963) - 1855629..1856156 (-) 528 WP_011173971.1 inorganic diphosphatase -
  THTHE16_RS09995 (Ththe16_1964) - 1856189..1856815 (+) 627 WP_014510982.1 YcxB family protein -
  THTHE16_RS10000 (Ththe16_1965) comEA 1856788..1857096 (+) 309 WP_024119555.1 ComEA family DNA-binding protein Machinery gene
  THTHE16_RS10005 (Ththe16_1966) comA/comEC 1857093..1859126 (+) 2034 WP_014510983.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  THTHE16_RS10010 (Ththe16_1967) - 1859114..1859923 (-) 810 WP_014510984.1 ParB/RepB/Spo0J family partition protein -
  THTHE16_RS10015 (Ththe16_1968) soj 1859907..1860656 (-) 750 WP_014510985.1 chromosome-partitioning ATPase Soj -
  THTHE16_RS10020 (Ththe16_1969) rsmG 1860650..1861399 (-) 750 WP_014510986.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  THTHE16_RS10025 (Ththe16_1970) mnmG 1861399..1863192 (-) 1794 WP_014510987.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 677 a.a.        Molecular weight: 71840.04 Da        Isoelectric Point: 10.2728

>NTDB_id=45791 THTHE16_RS10005 WP_014510983.1 1857093..1859126(+) (comA/comEC) [Thermus thermophilus SG0.5JP17-16]
MRPSWTWGVGLGAGALVAAWGLFAPWAFLGLGLLPFLRLPFALGFGLVLARALLFPLPEPPWGAAVEGVFAVRGGFTRAE
GHLLWVSHYPPLPDGRYRLRGRIAPPQGRTNPGGFDQRAWLLSRGAKGVLRAESAEPLGPLPDWREGFRERLGAGLSLEA
REVVEGLVLGDKAGLEAAYPLFQRAGLAHLLALSGLHVGVLVGFAVLGLYPLGRWRYLLALALLPFYLLLAGPSPSLVRA
SLMAGLSLLGLFLGLGGAGVVQALGLALFLQLLLRPEALLGLGFQLSYLAVLGLALVLPALRLPPGPRGYLLGGVAASLA
VQAFLLPLLLHRFGFAPLLAPLANLLALPLVALLVPLGFLKLFLGALPAPLVEPLARGLLLLAGLAAQGPLLRWGEIAPP
GFALYYLGLLPLLFALHRKLPWRRALLLASLPALVGLLAAWPKPLDLWMLDVGQGDALLARMGGGEVLVDGGRVEKGETV
VRALRALGVEALELLVATHPDADHYGGLLRVAEEVPVGLALLAPGFPEDHPLAEALRARGVPVVRAGAGTRLKVGQGEVR
VLWPEALSGDDNQDGLALLLDFGRGRALLLADLPREVEARLPVGEVEALKVSHHGSKSGTSEALLERTRPRVALIGVGKN
PFGHPHPEVLERLKRHGAEVRRTDQDGAVRVLFGYAW

Nucleotide


Download         Length: 2034 bp        

>NTDB_id=45791 THTHE16_RS10005 WP_014510983.1 1857093..1859126(+) (comA/comEC) [Thermus thermophilus SG0.5JP17-16]
ATGAGGCCTTCTTGGACCTGGGGAGTGGGGCTTGGGGCGGGGGCTTTGGTGGCCGCCTGGGGGCTTTTCGCGCCTTGGGC
CTTCCTTGGGCTCGGCCTCCTTCCCTTCCTCCGCCTTCCCTTCGCCCTGGGCTTCGGCCTCGTCCTGGCCCGGGCCCTCC
TCTTCCCCTTGCCCGAGCCCCCGTGGGGCGCCGCCGTGGAGGGGGTCTTCGCCGTGAGGGGCGGGTTCACACGGGCGGAG
GGCCACCTCCTCTGGGTGAGCCACTATCCCCCTCTACCGGACGGCCGCTACCGCCTCCGGGGGCGCATCGCCCCGCCCCA
AGGCCGGACCAACCCCGGGGGGTTTGACCAACGGGCCTGGCTCCTGAGCCGGGGGGCCAAGGGGGTGCTCCGGGCCGAAA
GCGCCGAGCCCTTGGGGCCCCTGCCCGACTGGAGGGAAGGGTTCCGGGAACGCCTAGGGGCGGGCCTGAGCCTCGAGGCC
CGGGAGGTGGTGGAGGGCCTGGTCCTCGGGGATAAGGCGGGCTTAGAAGCGGCCTACCCCCTCTTCCAGCGGGCGGGCCT
CGCCCACCTCCTGGCGCTCTCTGGCCTTCACGTGGGGGTGCTCGTGGGCTTCGCCGTCCTCGGCCTCTACCCCCTGGGGC
GGTGGCGCTACCTCCTGGCCCTCGCCCTCCTCCCCTTTTACCTCCTTCTCGCCGGGCCGAGCCCCTCCCTGGTGCGGGCG
AGCCTCATGGCGGGCCTGTCCCTCCTCGGCCTCTTCCTGGGCCTTGGGGGGGCCGGGGTGGTCCAGGCCCTGGGGCTCGC
CCTCTTCCTCCAGCTCCTCCTCCGCCCCGAGGCCCTCCTCGGCCTCGGGTTCCAGCTCTCCTACCTCGCGGTGCTGGGCC
TGGCCCTGGTCCTCCCGGCCCTGAGGCTTCCCCCGGGCCCCAGGGGCTATCTCCTCGGGGGCGTGGCCGCAAGCCTGGCC
GTCCAGGCCTTCCTCCTCCCCCTCCTCCTCCACCGCTTCGGCTTCGCCCCTCTCCTCGCCCCCCTCGCCAACCTCCTCGC
CCTCCCCCTGGTGGCCCTCCTCGTTCCCCTCGGCTTCCTCAAGCTCTTCCTCGGCGCCCTCCCCGCCCCCCTGGTGGAGC
CCCTCGCCCGGGGGCTCCTCCTCCTGGCAGGGCTTGCGGCCCAAGGGCCCCTCCTCCGCTGGGGGGAGATCGCCCCCCCA
GGCTTTGCCCTCTACTACCTGGGCCTTCTCCCCCTCCTTTTCGCCCTCCACCGCAAGCTTCCCTGGCGGCGCGCCCTCCT
CCTCGCCTCCCTGCCCGCCCTGGTGGGCCTCCTCGCCGCCTGGCCCAAGCCGCTGGACCTCTGGATGCTGGACGTGGGCC
AGGGGGACGCCCTCCTCGCCCGCATGGGGGGCGGGGAGGTCCTGGTGGACGGGGGACGGGTGGAGAAAGGAGAAACAGTG
GTCCGGGCCCTCCGCGCCCTCGGGGTGGAGGCCCTGGAGCTTTTGGTGGCCACCCACCCCGACGCGGACCACTACGGGGG
ACTCCTCCGGGTGGCGGAGGAGGTTCCCGTGGGCCTTGCCCTCCTCGCCCCCGGCTTCCCCGAGGACCACCCCCTGGCCG
AAGCCTTAAGGGCCCGGGGCGTCCCCGTGGTGCGGGCCGGGGCGGGAACCCGCCTTAAGGTGGGCCAGGGCGAGGTCCGG
GTGCTCTGGCCCGAGGCCCTCTCCGGGGACGACAACCAAGACGGCCTCGCCCTCCTCCTGGACTTCGGCCGGGGACGGGC
CCTCCTCCTCGCCGACCTGCCCCGGGAGGTGGAGGCCAGGCTTCCCGTGGGAGAGGTGGAGGCGCTCAAGGTGAGCCACC
ACGGTTCCAAAAGCGGCACCTCCGAGGCCCTGCTGGAAAGGACCCGGCCCCGGGTGGCCCTCATCGGGGTGGGGAAAAAC
CCCTTCGGCCACCCCCACCCCGAGGTTCTGGAGCGCCTTAAGCGCCACGGCGCGGAGGTGCGCCGCACCGACCAGGACGG
GGCGGTGCGCGTCCTCTTCGGCTACGCCTGGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(167-418)

Metallo-beta-lactamase superfamily (Lactamase_B)

(451-635)

Domain of unknown function (DUF4131) (DUF4131)

(93-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

98.08

100

0.981
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.457

90.547

0.366

Multiple sequence alignment