Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   THTHE16_RS07090 Genome accession   NC_017272
Coordinates   1343350..1344228 (+) Length   292 a.a.
NCBI ID   WP_014510585.1    Uniprot ID   F6DIG6
Organism   Thermus thermophilus SG0.5JP17-16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338350..1349228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THTHE16_RS07065 (Ththe16_1387) - 1339353..1339844 (+) 492 WP_041445020.1 DUF5317 family protein -
  THTHE16_RS07070 (Ththe16_1388) - 1339899..1340903 (+) 1005 WP_014510581.1 homoisocitrate dehydrogenase -
  THTHE16_RS07075 (Ththe16_1389) pilM 1341033..1342166 (+) 1134 WP_014510582.1 type IV pilus assembly protein PilM Machinery gene
  THTHE16_RS07080 (Ththe16_1390) pilN 1342159..1342782 (+) 624 WP_014510583.1 competence protein Machinery gene
  THTHE16_RS07085 (Ththe16_1391) pilO 1342772..1343353 (+) 582 WP_008632866.1 type 4a pilus biogenesis protein PilO Machinery gene
  THTHE16_RS07090 (Ththe16_1392) pilW 1343350..1344228 (+) 879 WP_014510585.1 hypothetical protein Machinery gene
  THTHE16_RS07095 (Ththe16_1393) pilQ 1344225..1346492 (+) 2268 WP_014510586.1 secretin N-terminal domain-containing protein Machinery gene
  THTHE16_RS07100 (Ththe16_1394) aroC 1346551..1347702 (+) 1152 WP_008632875.1 chorismate synthase -
  THTHE16_RS07105 (Ththe16_1395) - 1347727..1348281 (+) 555 WP_008632876.1 shikimate kinase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 29879.35 Da        Isoelectric Point: 4.5786

>NTDB_id=45785 THTHE16_RS07090 WP_014510585.1 1343350..1344228(+) (pilW) [Thermus thermophilus SG0.5JP17-16]
MKNAWQRLKEAWANLPRSTKLLLAALLLVGGVALWYVGLYLPAQVAEAPTPAPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEDQAPASSQEEAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASRPTPVPEGPAVRVQTPAPAPQAAPATRPIPG
TSGALPAPKILSPALSAPLPQARETPPRVAVPTALVEAPLPGPEEKGAEKAPTPASPLERLVAEKGLRLSGTLLGPVSVA
ILESKEGYLVVPAGSPIPGTEAVVRQVEEGSVTLALKEETLNLSLVQAGGGQ

Nucleotide


Download         Length: 879 bp        

>NTDB_id=45785 THTHE16_RS07090 WP_014510585.1 1343350..1344228(+) (pilW) [Thermus thermophilus SG0.5JP17-16]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGCCAACCTGCCCAGGTCCACCAAGCTCCTCCTGGCGGCCCTCCT
TCTCGTGGGGGGCGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAGCGCCCACCCCGGCCCCCT
CCACGCAGGTCATCGAGGCCCCCCCGATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAGGAGGACCAGGCGCCCGCTTCTTCCCAAGAGGAGGCCCAGGCGCCCCCGCCCGCCCCCGTGGCCCGGGCCGAGCC
CCCGCCCCCGAACCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCCGCCCCACGCCCG
TCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCTGCCCCGGCCCCCCAGGCGGCCCCCGCCACCCGGCCCATCCCCGGG
ACCTCCGGCGCCCTCCCGGCGCCCAAGATCCTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGAGACGCCGCC
TAGGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAAGGGGGCGGAGAAGGCCCCCACCC
CGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCCGTGAGCGTGGCC
ATCCTGGAGAGCAAGGAGGGCTACCTCGTCGTCCCGGCGGGAAGCCCCATCCCCGGCACGGAGGCCGTGGTGCGCCAGGT
GGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAACCTGTCCCTCGTCCAAGCTGGAGGTGGCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6DIG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

99.315

100

0.993

Multiple sequence alignment