Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JJB22_RS17030 Genome accession   NZ_CP067307
Coordinates   3630210..3630947 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ABW_A19     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3625210..3635947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB22_RS17015 (JJB22_17010) clpC 3625664..3628237 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  JJB22_RS17020 (JJB22_17015) yfiH 3628367..3629098 (-) 732 WP_021577822.1 purine nucleoside phosphorylase YfiH -
  JJB22_RS17025 (JJB22_17020) rluD 3629095..3630075 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JJB22_RS17030 (JJB22_17025) comL 3630210..3630947 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JJB22_RS17035 (JJB22_17030) raiA 3631218..3631559 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JJB22_RS17040 (JJB22_17035) pheL 3631663..3631710 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JJB22_RS17045 (JJB22_17040) pheA 3631809..3632969 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JJB22_RS17050 (JJB22_17045) tyrA 3633012..3634133 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JJB22_RS17055 (JJB22_17050) aroF 3634144..3635214 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JJB22_RS17060 (JJB22_17055) yfiL 3635424..3635789 (+) 366 WP_024248389.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=457809 JJB22_RS17030 WP_000197686.1 3630210..3630947(+) (comL) [Escherichia coli strain ABW_A19]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=457809 JJB22_RS17030 WP_000197686.1 3630210..3630947(+) (comL) [Escherichia coli strain ABW_A19]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCAGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376