Detailed information NTG0457688

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HV239_RS21245
• Genome accession: NZ_CP055451
• Coordinates: 4309734..4310534 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain RHBSTW-00574
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4304734..4315534

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV239_RS21210 (HV239_21210)	gspH	4304890..4305405 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
HV239_RS21215 (HV239_21215)	gspI	4305402..4305767 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
HV239_RS21220 (HV239_21220)	gspJ	4305764..4306360 (+)	597	WP_181469622.1	type II secretion system minor pseudopilin GspJ	-
HV239_RS21225 (HV239_21225)	gspK	4306357..4307343 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
HV239_RS21230 (HV239_21230)	gspL	4307330..4308523 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
HV239_RS21235 (HV239_21235)	-	4308516..4309001 (+)	486	WP_060416098.1	type II secretion system protein M	-
HV239_RS21240 (HV239_21240)	-	4308991..4309737 (+)	747	WP_060416097.1	type II secretion system protein N	-
HV239_RS21245 (HV239_21245)	pilD	4309734..4310534 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
HV239_RS21250 (HV239_21250)	hrpB	4310582..4313011 (-)	2430	WP_040236129.1	ATP-dependent helicase HrpB	-
HV239_RS21255 (HV239_21255)	thpR	4313084..4313620 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
HV239_RS21260 (HV239_21260)	sfsA	4313620..4314336 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
HV239_RS21265 (HV239_21265)	dksA	4314499..4314954 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=457688 HV239_RS21245 WP_004191960.1 4309734..4310534(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00574]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=457688 HV239_RS21245 WP_004191960.1 4309734..4310534(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00574]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCAGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTATTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGAGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421